Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F000448265.2_202016-06- 02] 5,026 sequences; 39,481,229 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq3693 125 8e-24 seq4807 113 5e-20 seq2815 91.5 2e-13 >seq3693 Length=10515 Score = 125 bits (138), Expect = 8e-24 Identities = 144/191 (75%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 42994 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 43053 |||| || || ||||| || | || || || |||| || |||||||| || ||||| | Sbjct 8307 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 8248 Query 43054 TGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG 43113 | || ||||||||||| | ||| | | |||||||||| |||||| || |||| | | | Sbjct 8247 TCAGACGCTGCTGGTCAGGCGGAATTCCCTCCTTGTCCTGGATTTTCTGCTTGA-CATTG 8189 Query 43114 CCACCG-TGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 43172 || | |||| || ||||| |||| ||||||||| |||||||| || ||||| ||| Sbjct 8188 TCAATGCTGTCCGACGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACA 8129 Query 43173 AAGATTTGCAT 43183 ||||| ||||| Sbjct 8128 AAGATCTGCAT 8118 >seq4807 Length=216255 Score = 113 bits (124), Expect = 5e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033 ||||| || | ||| |||||| || || ||||| || ||| || || |||| || Sbjct 289 CACCAGGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCCTC 230 Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093 |||||||| || ||||| || || ||||||||||| | ||| | || |||||||| Sbjct 229 CAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCTTG 170 Query 43094 GATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 43153 |||||| || || | | | | || ||| | ||||| |||| ||||||||| || Sbjct 169 GATTTTCTGCTTCACATTGTCGATCGAGTCCGAAGGCTCCACGTCGAGCGTGATGGTCTT 110 Query 43154 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||||| || ||||| || ||||| ||||| Sbjct 109 GCCCGTCAGTGTCTTCACGAAGATCTGCAT 80 >seq2815 Length=67856 Score = 91.5 bits (100), Expect = 2e-13 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||||| ||||| || | ||||||||||| || || ||||| || | |||||| || | Sbjct 8778 ACGCAGCACCAGGTGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCCGACAGAGTGCGGCC 8837 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 ||| || |||||||| |||||||| || || ||||||||||| | ||| Sbjct 8838 GTCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGG 8885 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571781675559280