Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F000448265.2_202016-06- 02] 5,026 sequences; 39,481,229 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq4688 293 2e-74 seq4314 168 6e-37 seq4807 158 1e-33 seq3693 122 8e-23 >seq4688 Length=42416 Score = 293 bits (324), Expect = 2e-74 Identities = 1212/1892 (64%), Gaps = 39/1892 (2%) Strand=Plus/Plus Query 22105 CTTGTCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATGCC 22164 ||||||||| || ||||| ||||||| || ||| ||| | || |||||||| Sbjct 39514 CTTGTCCACGGTGAACTGGATGGCGTCAGCTTTCGGGCGTCCGCGCATGTAGTACATGCC 39573 Query 22165 CGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTCGG 22224 |||||| || ||| |||||||||||||||| || ||||| || | || | | |||| Sbjct 39574 CGTCTTGAGCCCCTTCTTCCACGCGTAAAAGTGCATCGATGTAAGCTTGCTTTTTGTCGG 39633 Query 22225 CAAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCGGC 22284 | | |||| | || | ||||||||||||| ||| | || || ||||| || | Sbjct 39634 TTCGGCGATGTGAATGTTCAGCGACTGACTCTGACAGATGTAGGCACCACGATCCGCAGA 39693 Query 22285 CATATTTATCAATGTACGCAT-CGACATTTCCCATACGGTCTTGTACAGTTGCCTGATCT 22343 || | | ||| || | | || ||||| || ||||||||| | | |||| | Sbjct 39694 CAGGTCCAG-AATCGACTTCTGCTTGATCTCCCACACCGTCTTGTACTTCTCCTTGATGT 39752 Query 22344 CTAACGGTATCGATTCGATCCTCTGGACGGACCCGTTATTGTGTATGATCAAATTTTTAA 22403 ||| || || | |||| || || ||| | | | |||| || | Sbjct 39753 GGTCCGGAATGGAGCTCACATTCTGCACCGAACCGCCGTCATTCAAGATCTGGTTACGCA 39812 Query 22404 TCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCACTT 22463 | | ||||| ||| | | ||| || || | ||| | |||||| | Sbjct 39813 CCTCAGGAGCCCACACACCCAGCTCAATCAGCTCATTCATCAGGTACTTGTTCACGATGG 39872 Query 22464 GAAACTCGCCGGACAAG-ACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGAT 22522 |||||| || | |||| |||||||| | ||| ||||| || ||||||||||||| ||| Sbjct 39873 TAAACTCTCCCG-CAAGCACGCGGCGGTTGTACATGTTAGAGGTGAACGGTTCGATAGAC 39931 Query 22523 TCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAG 22582 || || || || || ||||| || || || || |||||||||||||| | ||| ||||| Sbjct 39932 TCGTTATTACCGAGGATCTGTGCCGTAGACGCCGTCGGCATCGGCGCGACCAGGAGCGAA 39991 Query 22583 TTTCTCAAGCCGTGCTTTGAAATTTTACTCTTGAGCATCGACCAGTCCCACAGATC---G 22639 || | || ||||| ||| | || ||| ||| | ||||||||||||| | | Sbjct 39992 TTGCGCAGGCCGTTCTTGACCACCTTCTCCTTAAGCGCAGCCCAGTCCCACAGACCGGAG 40051 Query 22640 GACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGGGCTGCCT 22699 || ||||| || || |||||||||| | || || | || || || || || Sbjct 40052 GAAGGCGTGAC---GTTCCACATATCGAACTGGAAGATACCCTTGCTGGCAGGCGAACCC 40108 Query 22700 TCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCTCGCCTCCAACGCGCCG 22759 | | | || |||||||| || || || ||| ||||| || ||||| | || Sbjct 40109 TGGAAAGTCTCGTACGGGCCCAATTCCGTGGCCAGTTCCATTGACGTCTCCATAGAAGCG 40168 Query 22760 TAATATATAGTCTCGAAGATTTTCTTGTTCAATTC-GGCGGCGGCGACGCTTTCGTACGG 22818 || || || ||||||||||| |||||||| | || ||| | || || ||| ||| Sbjct 40169 TAGTAGATGGTCTCGAAGATATTCTTGTTGAGCTCACGCGCCTCCG-GACTCTCGAACGC 40227 Query 22819 CATACGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTCGGTT 22878 | ||| | | ||| |||||||| | ||||| || || ||||| | || |||| Sbjct 40228 AAAGTCCATGAGGATGAAAGCGTCCGCAAGGCCCTGCACACCAATACCAACAGGACGGTG 40287 Query 22879 TTTCAGATTCGACACTTTTGCCTCGGGCAAAGGATACCAATTCGAATCGATTGTTCTGTT 22938 || || || ||||| | || || | || ||||| |||| Sbjct 40288 ACGCATGTTGGAATTGCGAGCCTCAATAACGGGGTAGTAGTTGACGTCGATGACCTTGTT 40347 Query 22939 CAAGTT---TCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAACGCC 22995 || ||| | || |||| || || || | ||| | | ||| | Sbjct 40348 CAGGTTGCGTGTGATCAC-CTTGACGACAT--CATACAGCTTCTTGTAGTTGAATACGGC 40404 Query 22996 CGATTGTACAACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTC 23055 || | |||| |||||| || || | || || | ||||| ||||||||||| || Sbjct 40405 --GTTCT-CAACGAACTTGGGGAGCGCCACGGACGCCAAGTTGCACACGGCCACCTCATC 40461 Query 23056 TTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATT 23115 ||||| ||||| | | ||| || | ||||| | |||||||| | || Sbjct 40462 AGGCGACGTATACTCCATCACTTCACAGCACAAGTTGCTCGAGCGAATCGTGCCGAGGTT 40521 Query 23116 GCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTC 23175 ||| || || || ||| | |||||||| | |||| | ||| ||||||||| Sbjct 40522 CTGCTGATTAGACTTGCGGTTGGCGGCGTCCTTGTATAACATGAAAGGCACGCCCGTCTC 40581 Query 23176 GACCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACACGTCGCACGTAC-C 23234 | ||||| || | || || ||||| ||||| | | ||| || | | Sbjct 40582 AATCTGCGCGTCCAGAATAGCGAACCACAGCTGTTGAGCATTGA-TTGTCTTGCGGGCGC 40640 Query 23235 TGCCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCA 23294 |||||| ||||||||| | ||| || || || || | || | || ||| || Sbjct 40641 GGCCTTCACGCTCGTACTTCTCAAACAGCGTCTCGAACTCCTCTCCCCAGCACTCGTACA 40700 Query 23295 GGCCGGGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATT---TTCAACGCGTC 23351 | ||||| | | | ||||| | | ||||||| | | |||| || || || Sbjct 40701 GACCGGGAGCCTCGTTGGGACAGAACAAACTCCACTT---GCCATTGGCCTCCACACGCT 40757 Query 23352 TCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTT 23411 |||| || |||||||| | ||| ||||| ||||||| || || || || | ||| | Sbjct 40758 TCATGAATAGATCCGGCACCCACAGAGCATAGAACAAGTCACGTGCACGGTGCAGCTCGT 40817 Query 23412 TGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGT 23471 | || |||||| || |||||| || || ||||| || || |||||||| || || | Sbjct 40818 TACCATGGTTCTTGCGCAGATCCAAGAACTCAAACACATCAGCGTGCCACGGTTCCAGAT 40877 Query 23472 AAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGT 23531 ||| ||||| | ||| | ||| || ||||| || |||||||| ||||| | || Sbjct 40878 AAATCGCAAATGATCCCTTGCGTTTACCTCCACCCTGGTCCACGTAACGTGCCGTATCGT 40937 Query 23532 TGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCG 23591 | |||||| ||||| || | || |||||||||| |||| | || ||| | | Sbjct 40938 TAAACACTCGCAGCATGGGGATGATGCCGTTGGACGAGCCG--TTCG--TGCCGCGGATG 40993 Query 23592 AACCTTTT----GCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGAT 23647 | || || ||||| | |||||| | || || |||||||| || | || || Sbjct 40994 TAGCTGTTAGTAGCTCGGATGTTGTGCATACTGATGCCAATGCCTCCTGCCCACTTGGAG 41053 Query 23648 ATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCG 23707 || ||| || |||||||||||||| || ||||| || || ||| || | | || Sbjct 41054 ATGCACGCACACTGTTTCAGAGTGTCATAAATGCCTTCAATAGAGTCATCCTGCATGGCC 41113 Query 23708 ACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTG 23767 | |||||| |||||||||| ||| | || ||| | || |||||| || ||| || Sbjct 41114 AACAAGAAGCACGAAGACAATTGTGGACGTGGGGTACCAGCATTGAACAGCGTGGGGGTG 41173 Query 23768 GCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAATG-TC 23826 ||||| || ||| || | |||||| || | ||| || || | || || | ||| || Sbjct 41174 GCGTGGGTGAAGAATTTTTGCGACATGAGTTCGTAAGTCTCAAGTGCCGCCTTGATGTTC 41233 Query 23827 CTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGACCGTGAC 23886 ||| ||| || || | || |||||||| ||||| | || || | || ||| Sbjct 41234 GTCT-TGTGGATGCCTAGAGCCACGCGCATGATCATCTGCTGGGGACGTTCCACCACTTT 41292 Query 23887 GCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTT 23946 ||||| | ||| |||||| | | || || ||||| |||||||| || || | Sbjct 41293 GCCGTGGACACGGAAGAGATATCCCCTCTCCAGTGTCTTAAAGCCAAAATAATCGTATTC 41352 Query 23947 AAAGTCACGATCGTGCACTATGGCCGAATTCA 23978 |||||| || || || | |||||||| |||| Sbjct 41353 AAAGTCTCGGTCATGGATAATGGCCGAGTTCA 41384 >seq4314 Length=236279 Score = 168 bits (186), Expect = 6e-37 Identities = 546/834 (65%), Gaps = 14/834 (2%) Strand=Plus/Plus Query 57567 GACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGAC 57626 ||| | ||| | |||||||| ||||| || || || ||||| | ||||| | ||| Sbjct 45368 GACGTGTGGCAGATGTACAAGAAGGCGGAGGCCAGCTTCTGGACTGCGGAAGAGCTGGAC 45427 Query 57627 CTGTCTAAGGATCTGAGCGATTGGGATTCCCTCAAAGAATCTGAGAGAAATTTTATTAAA 57686 || | || || | || |||| ||||| ||| ||| | | || || || Sbjct 45428 TTGGTACACGACCTCAAGGACTGGGGAAACCTCACAGACAACGAGCGTCACTTCATCAAG 45487 Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746 ||||| ||||| || || ||||| ||||| || || |||||||| ||| | | | Sbjct 45488 CACGTCTTGGCCTTCTTTGCCGCCAGTGATGGCATCGTGAACGAGAACCTGG-CTATGAA 45546 Query 57747 TTTTCACAA-GAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCAT 57805 ||| ||| ||||| || ||| | ||||| | ||||| ||||| || ||| | ||||| Sbjct 45547 CTTTAGCAATGAAGTACAGGTGCCTGAGGCTCGTTGCTTCTACGGCTTCCAAATTGCCAT 45606 Query 57806 TGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACGA 57865 ||| ||| | || ||||| |||| ||||| ||||| || |||||| | |||||| | Sbjct 45607 TGAGAACATCCACTCAGAGGTGTACTCGCTGCTCATTGACACGTACATCAAGGACGCTGT 45666 Query 57866 CGAGAAACGTAGACTGTTCAACGCGATCGAAACAATGCCCGCGATCG-CCAAGAAGGCAG 57924 ||||| ||| | || || || || || |||| | | |||||||||| | Sbjct 45667 GGAGAAGGACCACCTGCTGCGTGCAATTGAGACCAT-CCCGTGTGTGACCAAGAAGGC-G 45724 Query 57925 AGT-GGTCAATCAAATGGATAAAAAGCGCCACGG-CCACGTTCGCCGAGAGGCTAATCGC 57982 ||| || | | | |||| | | || | | || | | | | ||| | || | || Sbjct 45725 AGTTGGGCGCTAAGATGG-TGCGACCCGAAAGTGTCCTCATACCCGGAGCGTCTTCTGGC 45783 Query 57983 GTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAA 58042 || || || || || || || ||||| |||||| |||| | || || ||| | || Sbjct 45784 ATTTGCAGCTGTGGAGGGAATCTTCTTCTCGGGCTCCTTTTGCTCCATCTTCTGGCTCAA 45843 Query 58043 GAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGG 58102 ||| || || || ||||| || |||| || ||||||| | || || || || || Sbjct 45844 GAAGCGTGGTCTCATGCCTGGTCTGAGCTTCTCCAACGAGCTCATTAGTCGTGATGAAGG 45903 Query 58103 TCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAACCGACGCGGGA 58162 | | || || || ||||| || || ||||||| | | || | || | | || | | Sbjct 45904 TATGCACACAGACTTTGCTTGTCTGTTGTACTCGAAGCTGGTGACCAAGCTGCCGGAGCA 45963 Query 58163 TCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACCGAAGC 58222 || | || |||||| || || || ||||||| | |||||||| | ||| | Sbjct 45964 GCGTGTGCACGAGATTATCCGTGACGCTGTGAAGATCGAACACGAGTTTGTGAGCGACTC 46023 Query 58223 CCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGAGTTTGT 58282 || || |||| || |||| |||||| | | |||| ||||||||||||| || Sbjct 46024 GCTCCCAGTGGAGCTGATCGGCATGAACTCGGCGCTCATGTGCCAGTACATTGAGTTCGT 46083 Query 58283 TGCCGACAGACTTTTGCTCGAACTGATTGGAGAG--CGTCAT-TACAACACGAAAAATCC 58339 || ||| | | |||| | | |||| | | | || |||||| || || || Sbjct 46084 GGCAGACCGCC---TGCTGTATTCGCTTGGTGTGTCCAAGATCTACAACGTCAAGAACCC 46140 Query 58340 GTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCGAAAA 58393 |||||| | ||| | ||||||| || |||||||||| ||||| ||||| || Sbjct 46141 GTTTGACTGGATGGACATGATCTCTCTACAGGGCAAGACTAACTTCTTCGAGAA 46194 >seq4807 Length=216255 Score = 158 bits (174), Expect = 1e-33 Identities = 173/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| ||||| ||||| || ||||| ||||||| || || || Sbjct 79 CATGCAGATCTTCGTGAAGACACTGACGGGCAAGACCATCACGCTCGACGTGGAGCCTTC 138 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||| |||| | || || |||| ||| |||||||||||| | ||||| ||||| Sbjct 139 GGACTCGATCGACAATGTGAAGCAGAAAATCCAAGACAAGGAAGGCATCCCGCCTGACCA 198 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||||||| || ||||| ||||| ||| |||| ||| | || ||||||| || || Sbjct 199 GCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGCGACTACAA 258 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||| || || || || || ||||| ||||| ||| | ||| | ||||||| Sbjct 259 CATCCAGAAGGAGTCTACACTTCACCTGGTGCTTCGCCTGCGTGGCGGTA 308 >seq3693 Length=10515 Score = 122 bits (134), Expect = 8e-23 Identities = 123/160 (77%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 || |||||| || || || ||||| ||||| ||||| || ||||| ||||||| || || Sbjct 8114 AATCATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACGCTCGACGTGGAGCC 8173 Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 ||| ||||| | || | ||||| |||| ||| ||||||||| || | ||||| || Sbjct 8174 GTCGGACAGCATTGACAATGTCAAGCAGAAAATCCAGGACAAGGAGGGAATTCCGCCTGA 8233 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC 31348 |||||||||||| || ||||| ||||| ||| | || ||| Sbjct 8234 CCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAGGAC 8273 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445738394725920