Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F000448265.2_202016-06- 02] 5,026 sequences; 39,481,229 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq4314 150 2e-31 seq4688 113 6e-20 >seq4314 Length=236279 Score = 150 bits (166), Expect = 2e-31 Identities = 387/585 (66%), Gaps = 7/585 (1%) Strand=Plus/Minus Query 33574 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAA 33633 ||| || ||| || || || ||||| ||| || || | |||||| | ||||| || | Sbjct 45932 ACAACAGACAAGCAAAGTCTGTGTGCATACCTTCATCACGACTAATGAGCTCGTTGGAGA 45873 Query 33634 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGG 33693 | | || || ||||| || |||||||| || ||||| || ||||| || || || | Sbjct 45872 AGCTCAGACCAGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAGCAAAAGGAGCCCG 45813 Query 33694 AAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGG-CGCTG 33752 | ||||||||||| || || || ||||| || | ||| | ||| || || | || Sbjct 45812 AGAAGAAGATTCCCTCCACAGCTGCAAATGCCAGAAGACGCTCCGGGTATGAGGACACTT 45753 Query 33753 TCATGTATC--CACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTA 33810 || || | || || | |||||| |||||||| | ||||| || || || || | Sbjct 45752 TCGGGTCGCACCATCTTAGCGCCCAACTCGCCTTCTTGGTCACACACGGGATGGTCTCAA 45693 Query 33811 TGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGAC 33870 | ||| | || | || || || | || || | || || || || | || Sbjct 45692 TTGCACGCAGCAGGTGGTCCTTCTCCACAGCGTCCTTGATGTACGTGTCAATGAGCAGCG 45633 Query 33871 TATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCT 33930 |||| || || || ||||| |||||||| || || || |||||||| || | ||||| Sbjct 45632 AGTACACCTCTGAGTGGATGTTCTCAATGGCAATTTGGAAGCCGTAGAAGCAACGAGCCT 45573 Query 33931 CGGTAATCTGCACTTCTGTACAAAATCGTTCT--GCTAAATTTTCATTCACTATTCCATC 33988 | | | ||| ||||| | | ||| |||| || | || || ||||| || ||||| Sbjct 45572 CAGGCACCTGTACTTCATTGCTAAA--GTTCATAGCCAGGTTCTCGTTCACGATGCCATC 45515 Query 33989 ACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTT 34048 |||||| ||||| || ||||| || || || || || | |||| ||| || || Sbjct 45514 ACTGGCGGCAAAGAAGGCCAAGACGTGCTTGATGAAGTGACGCTCGTTGTCTGTGAGGTT 45455 Query 34049 ATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTC 34108 ||| || |||| || | | |||| |||||| | ||||| || ||||| Sbjct 45454 TCCCCAGTCCTTGAGGTCGTGTACCAAGTCCAGCTCTTCCGCAGTCCAGAAGCTGGCCTC 45395 Query 34109 TGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAA 34153 ||||| || ||||| | ||| | ||| || | ||||| ||||| Sbjct 45394 CGCCTTCTTGTACATCTGCCACACGTCGTGCTCCTGGATGGGGAA 45350 >seq4688 Length=42416 Score = 113 bits (124), Expect = 6e-20 Identities = 774/1236 (63%), Gaps = 12/1236 (1%) Strand=Plus/Plus Query 62683 CGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATG 62742 |||| || ||||| || ||||| ||||| || || || | || ||||| || || || | Sbjct 40167 CGTAGTAGATGGTCTCGAAGATATTCTTGTTGAGCTCACGCGCCTCCGGACTCTCGAACG 40226 Query 62743 GATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTAT 62802 | | | | ||| || || |||||||| | || || ||||||||||| | ||| | | Sbjct 40227 CAAAGTCCATGAGGATGAAAGCGTCCGCAAGGCCCTGCACACCAATACCAACAGGACGGT 40286 Query 62803 GTCTCTTATTAGAGATTTC-AGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTA 62861 | | | | || || ||| | ||| || || || || || || | || || | || Sbjct 40287 GACGCATGTTGGA-ATTGCGAGCCTCAATAACGGGGTAGTAGTTGACGTCGATGACCTTG 40345 Query 62862 TTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAAT-CGCCC 62920 || || || | || || ||||| ||||| | ||| || | | ||| || | Sbjct 40346 TTCAGGTTGCGTGTGATCACCTTGACGACATCATACAGCTTCTTGTAGTTGAATACGGCG 40405 Query 62921 ATCTATTACAAACATGTTCAATGCAACAGATGCCAGATTACACACGGCTACCTCATTAGC 62980 ||| || ||| || | || || || |||| || |||||||| ||||||| || Sbjct 40406 TTCTCA-ACGAACTTGGGGAGCGCCACGGACGCCAAGTTGCACACGGCCACCTCATCAGG 40464 Query 62981 ATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTG 63040 || ||| | || | ||| ||| | || || | || || || | || || Sbjct 40465 CGACGTATACTCCATCACTTCACAGCACAAGTTGCTCGAGCGAATCGTGCCGAGGTTCTG 40524 Query 63041 TTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAAT 63100 |||||| ||| ||| || ||||| || | ||||| || || || ||||| Sbjct 40525 CTGATTAGACTTGCGGTTGGCGGCGTCCTTGTATAACATGAAAGGCACGCCCGTCTCAAT 40584 Query 63101 CTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCCT 63160 ||| | || | ||| || ||| | | |||| || ||| | | | | Sbjct 40585 CTGCGCGTCCAGAATAGCGAACCACAGCTGTTGAGCATTGATTGTCTTGCGGGCGCGGCC 40644 Query 63161 TTCTCTTTCGTATAGAGTATACAATCGT-TCGAACTCGTCTCCCCAAACATTGTCCAATC 63219 ||| | ||||| | ||| ||| |||||||| |||||||| | || || | Sbjct 40645 TTCACGCTCGTACTTCTCAAACAG-CGTCTCGAACTCCTCTCCCCAGCACTCGTACAGAC 40703 Query 63220 TAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAA 63279 ||| || | ||||| | ||| ||||| || | ||| ||| || ||||| | Sbjct 40704 CGGGAGCCTCGTTGGGACAGAACAAACTCCACTTGCCATTGGCCTCCACACGCTTCATGA 40763 Query 63280 AGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTTGTTCTATGTTCCTCGTTTCCT 63338 | ||||| || | ||| ||||| ||| || | || | || | || |||||| || Sbjct 40764 ATAGATCCGGCACCCACAGAGC-ATAGAACAAGTCACGTGCACGGTGCAGCTCGTTACCA 40822 Query 63339 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 63398 ||||| ||||| | |||| | | | ||||| ||||||||||||| || || Sbjct 40823 TGGTTCTTGCGCAGATCCAAGAACTCAAACACATCAGCGTGCCACGGTTCCAGATAAATC 40882 Query 63399 GCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 63458 || | ||| ||||| ||| ||||| || | ||| | || || | ||| | Sbjct 40883 GCAAATGATCCCTTGCGTTTACCTCCACCCTGGTCCACGTAACGTGCCGTATCGTTAAAC 40942 Query 63459 ACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCA 63518 |||| || ||| || || || ||||| || || || || ||| ||| |||| | Sbjct 40943 ACTCGCAGCATGGGGATGATGCCGTTGGACGAGCCGTTCGTGCCGCGGATGTAGCTGTTA 41002 Query 63519 CTGGCACGAATAT--TACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATG 63576 | || || || | | | | |||| || || || |||||| || ||||| | | Sbjct 41003 GTAGCTCGGATGTTGTGCATACTGAT--GCCAATGCCTCCTGCCCACTTGGAGATGCACG 41060 Query 63577 CGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAA 63636 | || |||| | |||||||| |||||||| || ||||| |||| | | | Sbjct 41061 CACACTGTTTCAGAGTGTCATAAATGCCTTCAATAGAGTCATCCTGCATGGCCAACAAGA 41120 Query 63637 AACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCG 63696 | || ||||| ||| |||| | || || ||||| || | || || | ||||| | Sbjct 41121 AGCACGAAGACAATTGTGGACGTGGGGTACCAGCATTGAACAGCGTGGGGGTGGCGTGGG 41180 Query 63697 TAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGAT 63756 | || |||||| || | || | ||| ||||||| || | | || | | | | Sbjct 41181 TGAAGAATTTTTGCGACATGAGTTCGTAAGTCTCAAGTGCCGCCTTGATGTTCGTCTTGT 41240 Query 63757 GAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTA 63816 | || |||| || || ||||| | ||| ||||| || | ||| || | |||| || | Sbjct 41241 GGATGCCTAGAGCCACGCGCATGATCATCTGCTGGGGACGTTCCACCACTTTGCCGTGGA 41300 Query 63817 TTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTC 63876 || | || | |||| || ||||| |||||||| | |||| |||||||| Sbjct 41301 CACGGAAGAGATATCCCCTCTCCAGTGTCTTAAAGCCAAAATAATCGTATTCAAAGTCTC 41360 Query 63877 GTTCGTAAATAATAACCGAATTGAGCTTATCCTTAT 63912 | || | ||||| |||| || || | || |||| Sbjct 41361 GGTCATGGATAATGGCCGAGTTCAGTTGGTCTTTAT 41396 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629778031709280