Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F000448265.2_202016-06- 02] 5,026 sequences; 39,481,229 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq4314 199 6e-46 seq4401 118 2e-21 seq4688 111 2e-19 >seq4314 Length=236279 Score = 199 bits (220), Expect = 6e-46 Identities = 590/889 (66%), Gaps = 38/889 (4%) Strand=Plus/Plus Query 124995 CTGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTT 125054 || || |||||| | | || ||| | ||| | |||||||| ||||| ||||| ||| Sbjct 45347 CTATTCCCCATCCAGGAGCACGACGTGTGGCAGATGTACAAGAAGGCGGAGGCCAGCTTC 45406 Query 125055 TGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACT 125114 ||||| | |||||| | || || | ||||| | || |||| | | | || Sbjct 45407 TGGACTGCGGAAGAGCTGGACTTGGTACACGACCTCAAGGACTGGGGAAACC---TCACA 45463 Query 125115 GAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATC 125174 || | ||||| | || || |||| | |||||||||||||||| | ||||| ||| Sbjct 45464 GACAACGAGCGTCACTTCATCAAGCACGTCTTGGCCTTCTTTGCCGCCAGTGATGGCATC 45523 Query 125175 GTCAACGACAATCTGTTGACACGAT-TCTCTCAA-GAGTTGACCATTCCAGAGGTGTCGT 125232 || ||||| || ||| | | || | | ||| || | | || |||| |||| Sbjct 45524 GTGAACGAGAACCTG--GCTATGAACTTTAGCAATGAAGTACAGGTGCCTGAGGC-TCGT 45580 Query 125233 -GCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTG 125291 |||| ||||| |||||||| ||||||||| | ||||| || ||||||| || Sbjct 45581 TGCTTCTACGGCTTCCAAATTGCCATTGAGAACATCCACTCAGAGGTGTACTCGCTGCTC 45640 Query 125292 ATTGACATGTACATTCGCGATCCGCAACGTAAA-----CACATGCTCTTTAACGCAATCG 125346 ||||||| |||||| || ||| | | | ||| |||| | ||||| | Sbjct 45641 ATTGACACGTACATCAAGGA--CGCTGTGGAGAAGGACCACCTGCTGCGT---GCAATTG 45695 Query 125347 ACACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACA 125406 | || | |||| | | || ||||| |||| | | | ||| ||| ||| | Sbjct 45696 AGACCATCCCGTGTGTGACCAAGAAGGCGAGTTGGGCGCTAAGATGGTGCGACC-CGAAA 45754 Query 125407 A-GTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCG 125465 ||| || ||| | || | || ||||||| || || || ||||| |||||||| ||| Sbjct 45755 GTGTCCTCATACCCGGAGCGTCTTCTGGCATTTGCAGCTGTGGAGGGAATCTTCTTCTCG 45814 Query 125466 GG-TAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCA 125524 || | |||||| ||||||| |||||||||||||| || |||||||| || |||| Sbjct 45815 GGCTCCTTTTGCT-CCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCTGGTCTGAGCTT 45873 Query 125525 CAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGT- 125583 | |||||| | || ||| || || || | ||| |||||||| ||| ||| Sbjct 45874 CTCCAACGAGCTCATTAGTCGTGATGAAGGTATGCACACAGACTTTGCTTGTCTGTTGTA 45933 Query 125584 TTCGCAACTATCTGCGTCCCGAGTGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAA 125643 ||| | || | | || ||| | ||||| || | | ||| | Sbjct 45934 CTCGAAGCT---GGTGACCAAGCTGCCGGAGCAGCG-------TGTGCACGAGATTATCC 45983 Query 125644 CCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGT-CAGCATGATT 125702 || || |||| ||| ||||| |||||| | | ||| || || || || ||| |||| Sbjct 45984 GTGACGCTGTGAAGATCGAACACGAGTTTGTGAGCGACTCGCTCCCAGTGGAGC-TGATC 46042 Query 125703 GGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTAC 125762 |||||||||| ||| |||||| ||||||| ||||| |||||||| || || ||||| Sbjct 46043 GGCATGAACTCGGCGCTCATGTGCCAGTACATTGAGTTCGTGGCAGACCGCCTGCTGTAT 46102 Query 125763 GAG-TTGATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCAT 125821 | ||| | | | |||||| ||||||| |||||| || ||||| | ||| || || Sbjct 46103 TCGCTTGGTGTGTC-CAAGATCTACAACGTCAAGAACCCGTTTGACTGGATGGACATGAT 46161 Query 125822 ATCACTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTAC 125870 || ||| |||| ||||| ||||| ||||||||| || |||||||| Sbjct 46162 CTCTCTACAGGGCAAGACTAACTTCTTCGAGAAGCGTGTGGGCGAGTAC 46210 >seq4401 Length=89758 Score = 118 bits (130), Expect = 2e-21 Identities = 279/411 (68%), Gaps = 8/411 (2%) Strand=Plus/Plus Query 70067 GGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTAGAC 70126 || || ||||| |||||||| |||||||||||| | |||| || ||||||| || Sbjct 88306 GGAGACCTGGGACCAGTGTATGGATTCCAGTGGCGTCACTTTGGAGCCAAGTACACGGAT 88365 Query 70127 -TGCGAGACAGACTATTCGGGTCAGGGTGTTGATCAA-TTGCAGACAATCATTGACACTC 70184 ||| | ||||||| | || ||||| || |||||| |||| || | || ||| | Sbjct 88366 ATGCATG-CAGACTACACTGGACAGGGGGTGGATCAACTTGCTGAGG-TGATCCACAAAC 88423 Query 70185 TCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTGC 70244 | || || || || || | |||| || ||| | |||||||| || ||| | Sbjct 88424 TACGCACAAACCCGACCGACCGTCGGATTGTGTTGTCTGCGTGGAATCCAGCGGATCTCA 88483 Query 70245 ACCAAATGGCACTACCACCGTGTCAC-TGTTTGGCTCAGTTTTACTCGTACGATGGCAAA 70303 | | ||||| || ||||| |||||| ||||| | |||||||||| | |||||| | Sbjct 88484 ATGAGATGGCGCTGCCACCATGTCACATGTTTTG-TCAGTTTTACGTGGCGGATGGCGAG 88542 Query 70304 TTGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTTAACATT 70363 || || || ||||| ||| | || |||||||||||||| || || || ||||| Sbjct 88543 TTATCGTGTCAGATGTACCAGCGTTCGGCTGACATGGGCCTCGGCGTGCCGTTCAACATC 88602 Query 70364 GCAAGCTATTCTATGTTGACGC-ACATGATTGCTCACATTACCGGCCTGAAAGCGCACGA 70422 || || ||| | | |||||| || || | || || | | || ||||| | ||| Sbjct 88603 GCCAGTTATGCGCTACTGACGCGACTTG-TGGCCCAAGTGGCTGGTTTGAAACCTGGCGA 88661 Query 70423 GTTCGTACACACCATTGGCGACGCTCACGTGTATTTAAATCACATCGAGCC 70473 || | |||| ||||| || || ||||| || | || ||| | ||||| Sbjct 88662 ATTTATCCACATTATTGGTGATGCACACGTATACCTGAACCACGTAGAGCC 88712 >seq4688 Length=42416 Score = 111 bits (122), Expect = 2e-19 Identities = 150/206 (73%), Gaps = 6/206 (3%) Strand=Plus/Minus Query 96916 TGGAACCTTGGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTG 96975 ||||||| |||||||| || || ||||| || | || ||||||| ||| ||| | Sbjct 40874 TGGAACCGTGGCACGCTGATGTGTTTGAGTTCTTGGATCTGCGCAAGAACCATGG---TA 40818 Query 96976 AAGAG--GCAC-GAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGA 97032 | ||| |||| | || | |||||||| ||||| || |||||||| ||| | ||||||| Sbjct 40817 ACGAGCTGCACCGTGCACGTGACTTGTTCTATGCTCTGTGGGTGCCGGATCTATTCATGA 40758 Query 97033 AGCGCGTCAACGACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGT 97092 |||| || | | | |||| | ||||| | | || ||| || | | |||||||||| Sbjct 40757 AGCGTGTGGAGGCCAATGGCAAGTGGAGTTTGTTCTGTCCCAACGAGGCTCCCGGTCTGT 40698 Query 97093 CCGATTGCTGGGGCGAAGAGTTTGAG 97118 ||| |||||||| || ||||| ||| Sbjct 40697 ACGAGTGCTGGGGAGAGGAGTTCGAG 40672 Score = 93.3 bits (102), Expect = 6e-14 Identities = 126/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 98040 TACAAGACTGTCTGGGAGATTCCGACCAAGACGCTGATCGATATGGCTGCCGACAGAGGT 98099 |||||||| || |||||||| | ||| || | | || || |||| || | ||| Sbjct 39738 TACAAGACGGTGTGGGAGATCAAGCAGAAGTCGATTCTGGACCTGTCTGCGGATCGTGGT 39679 Query 98100 GTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCCGAGCCCACCTACAGTCGT 98159 | |||||| |||||||| ||| | || | || | ||||| || || | || Sbjct 39678 GCCTACATCTGTCAGAGTCAGTCGCTGAACATTCACATCGCCGAACCGACAAAAAGCAAG 39619 Query 98160 ATGACTTCGATACACTTTTACGCATGGAACAAGGGCCTCAAGACGGGCATGTACTA 98215 | || ||||| ||||||||||| ||||| ||||| |||||||||||||||||||| Sbjct 39618 CTTACATCGATGCACTTTTACGCGTGGAAGAAGGGGCTCAAGACGGGCATGTACTA 39563 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741012642955760