Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F000448265.2_202016-06- 02] 5,026 sequences; 39,481,229 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq2137 120 3e-22 >seq2137 Length=53320 Score = 120 bits (132), Expect = 3e-22 Identities = 236/347 (68%), Gaps = 4/347 (1%) Strand=Plus/Plus Query 5500 CACGCCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACGCCACCTC 5559 ||| || ||||| ||||| || || | || | | | || ||||| | |||||||| Sbjct 16748 CACTCCAGTGGAGCCGAAGCCTCCAGTACCACGTGCTGTCTCGTCGATCTCTGCCACCTC 16807 Query 5560 TTCCACATCGGGGAACGCAGCGCGCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTCTT 5619 ||| | || ||| || | ||| |||||| || || | |||||| || ||| Sbjct 16808 TTCGATCTCCGGGTACTCGATTTTCTCTAAGATCAATTGAGCCACTCGGTCTCCACGCTT 16867 Query 5620 TACCTCGAAATCGTTGTGGCCGAA--GTTGAACAGCACCACGCCCACGTTGCCGCGGTAG 5677 || ||| || | | | ||| |||||| || | ||||||||| || ||||||||| Sbjct 16868 GACTGGGAAGTCTTCG--GTCGAGTGGTTGAATAGAATCACGCCCACATTCCCGCGGTAG 16925 Query 5678 TCGGCGTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGCGG 5737 || ||||| || ||||| ||||| ||| ||||| | ||||| || || || ||||| Sbjct 16926 TCAGCGTCAATGACGCCTGCGCCAGTGTCAATGAACTTCTTGAGTGCGAGACCAGAGCGA 16985 Query 5738 GGAGCCACGCGGCCGTAGCACCCATCGGGAAGCTGTATCTGCAGGTCCGTGAACACCACT 5797 || || || ||| ||||||| || || || || || || ||| || |||| | Sbjct 16986 GGCGCTACACGGGCGTAGCAGCCGTCTGGTAGAGCGATGGCCAAGTCTGTTTTGACCAGT 17045 Query 5798 CGCCGACCGCCCGCAGGGACGATGCAGTCGCAAGCGCTGCAGAGGTC 5844 | || || ||||||| || | |||| |||||||| ||||||| Sbjct 17046 CCTTTGCCTCCAGCAGGGATGACGGCGTCGTAAGCGCTGGAGAGGTC 17092 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430028057286512