Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F000448265.2_202016-06- 02] 5,026 sequences; 39,481,229 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq4688 302 1e-76 seq4401 120 8e-22 >seq4688 Length=42416 Score = 302 bits (334), Expect = 1e-76 Identities = 1050/1628 (64%), Gaps = 33/1628 (2%) Strand=Plus/Minus Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 ||||| |||||||| || || ||| ||||||||| || | |||||| ||||||| Sbjct 41184 TTCACCCACGCCACCCCCACGCTGTTCAATGCTGGTACCCCACGTCCACAATTGTCTTCG 41125 Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 ||||| | | ||| |||| || || || || || || | |||||| || || | Sbjct 41124 TGCTTCTTGTTGGCCATGCAGGATGACTCTATTGAAGGCATTTATGACACTCTGAAACAG 41065 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCA 363726 ||||| || |||||| ||||| || ||||| | || ||||| | || || Sbjct 41064 TGTGCGTGCATCTCCAAGTGGGCAGGAGGCATTGGCATCAGTATGCACAACATCCGAGCT 41005 Query 363727 CAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGT 363786 ||||| ||||| |||||||| || | || || || | | |||||||| || Sbjct 41004 ACTAACAGCTACATCCGCGGCACGAACGGCTCGTCCAACGGCATCATCCCCATGCTGCGA 40945 Query 363787 GTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTT 363846 |||||| || |||| || | ||||| |||||||||||||| || ||||| || | ||| Sbjct 40944 GTGTTTAACGATACGGCACGTTACGTGGACCAGGGTGGAGGTAAACGCAAGGGATCATTT 40885 Query 363847 GCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAAC 363906 || || ||||| || || || || ||| | |||||||| | || || || || ||| Sbjct 40884 GCGATTTATCTGGAACCGTGGCACGCTGATGTGTTTGAGTTCTTGGATCTGCGCAAGAAC 40825 Query 363907 ACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCAT 363966 || || ||| ||||||||||| |||||||||| || ||||| | || | Sbjct 40824 CATGGTAACGAGCTGCACCGTGCACGTGACTTGTTCTATGCTCTGTGGGTGCCGGATCTA 40765 Query 363967 TTTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCA 364026 || |||||||| |||||||| | || ||| | || || || |||| ||| Sbjct 40764 TTCATGAAGCGTGTGGAGGCCAATGGCAAGTGGAGTTTGTTCTGTCCCAACGAGGCTCCC 40705 Query 364027 GGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAG 364086 ||||| | ||| ||||| || || | | | || | || ||||| || || Sbjct 40704 GGTCTGTACGAGTGCTGGGGAGAGGAGTTCGAGACGCTGTTTGAGAAGTACGAGCGTGAA 40645 Query 364087 GGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAG 364146 || || || |||||||| || || |||| ||||| || || |||| ||||| Sbjct 40644 GGCCGCGCCCGCAAGACAATCAATGCTCAACAGCTGTGGTTCGCTATTCTGGACGCGCAG 40585 Query 364147 ATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAG 364206 |||||||| || || | ||||| ||||| || | |||||||||||| || ||| Sbjct 40584 ATTGAGACGGGCGTGCCTTTCATGTTATACAAGGACGCCGCCAACCGCAAGTCTAATCAG 40525 Query 364207 CAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCGCT 364266 ||| |||| || || |||| ||||||| | || || | || || || || | Sbjct 40524 CAGAACCTCGGCACGATTCGCTCGAGCAACTTGTGCTGTGAAGTGATGGAGTATACGTCG 40465 Query 364267 CCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGT--AAAAG 364324 || || ||| ||||| || ||| | ||||| | ||||| || ||| || | || Sbjct 40464 CCTGATGAGGTGGCCGTGTGCAACTTGGCGTCCGTGGCGCTCCCCAAGTTCGTTGAGAAC 40405 Query 364325 ATGGTACTTTTGACCACCAGCATCTTTATGACGTAACCTATCATGCT-ACTTGCAATCTC 364383 ||| || || || || | || ||||| || | | || | || |||| || Sbjct 40404 GCCGTA--TTCAACTACAAGAAGCTGTATGATGTCGTC-AAGGTGATCACACGCAACCTG 40348 Query 364384 GACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGCCGAGCGTTCTAATATGCGT 364443 ||||||| |||||| || || || || || ||| || ||| || |||||| Sbjct 40347 AACAAGGTCATCGACGTCAACTACTACCCCGTTATTGAGGCTCGCAATTCCAACATGCGT 40288 Query 364444 CATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCTCAAGATG 364503 || || || ||||| ||||||| |||||||| || |||| ||| || | | | | Sbjct 40287 CACCGTCCTGTTGGTATTGGTGTGCAGGGCCTTGCGGACGCTTTCATCCTCATGGACTTT 40228 Query 364504 GCATTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTATTTT 364563 || || || || || || |||| || || ||| | ||||| || || || || | Sbjct 40227 GCGTTCGAGAGTCCGGAGGCGCGTGAGCTCAACAAGAATATCTTCGAGACCATCTACTAC 40168 Query 364564 GCCGCAATGACTGCTTCGTGTGATTTGGCAAAAACCAAGGGAAAGTACTCTACTTATGAG 364623 || | ||| | || || |||| | ||| |||| |||| || Sbjct 40167 GCTTCTATGGAGACGTCAATGGAACTGGCCACGGAATTGGGCCCGTACGAGACTTTCCAG 40108 Query 364624 GGGTCCCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAATGTCACGCCATCTGTC 364683 || || ||| |||| | |||||||| ||| | ||||| |||||||| || || Sbjct 40107 GGTTCGCCTGCCAGCAAGGGTATCTTCCAGTTCGATATGTGGAACGTCACGCCTTC-CTC 40049 Query 364684 CG----ATGGAACTGGGATACGCTACGTTCCAACGTTAAGAAGCATGGTACTCGCAACTC 364739 || ||| |||||| | |||| || || ||| | || ||||| || Sbjct 40048 CGGTCTGTGGGACTGGGCTGCGCTTAAGGAGAAGGTGGTCAAGAACGGCCTGCGCAATTC 39989 Query 364740 CCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTG 364799 ||| | ||||| ||||| ||||| ||||| |||||||||||||| || ||||||| Sbjct 39988 GCTCCTGGTCGCGCCGATGCCGACGGCGTCTACGGCACAGATCCTCGGTAATAACGAGTC 39929 Query 364800 CTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGT 364859 |||||||||| || || | || ||||| || ||| | ||||| ||| | | Sbjct 39928 TATCGAACCGTTCACCTCTAACATGTACAACCGCCGCGTGCTTGCGGGAGAGTTTACCAT 39869 Query 364860 AGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATGAA 364919 || || |||||||| | || || || || | || |||||| | || Sbjct 39868 CGTGAACAAGTACCTGATGAATGAGCTGATTGAGCTGGGTGTGTGGGCTCCTGAGGTGCG 39809 Query 364920 GAACTATATC----ATCGCCGCTAATGGTTCTGTGCAGAACAT----TCCAGGATTTCCA 364971 ||| | ||| || | || ||||| |||||||| | |||| |||| Sbjct 39808 TAACCAGATCTTGAATGACGGC----GGTTCGGTGCAGAATGTGAGCTCCA----TTCCG 39757 Query 364972 GAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGC-GAACTC--TCATT 365028 || | | ||| | ||||| || || ||||| || || || ||| || | | Sbjct 39756 GACCACATCAAGGAGAAGTACAAGACGGTGTGGGAGAT---CAAGCAGAAGTCGATTCTG 39700 Query 365029 GATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCATG 365088 || || | || ||||| ||||| | ||||||||||| |||||| | ||| | ||| Sbjct 39699 GACCTGTCTGCGGATCGTGGTGCCTACATCTGTCAGAGTCAGTCGCTGAACATTCACATC 39640 Query 365089 ACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAATCCGGTCTT 365148 | | || || |||||||||||| ||||| || |||| |||||| || || Sbjct 39639 GCCGAACCGACAAAAAGCAAGCTTACATCGATGCACTTTTACGCGTGGAAGAAGGGGCTC 39580 Query 365149 AAGACAGG 365156 ||||| || Sbjct 39579 AAGACGGG 39572 >seq4401 Length=89758 Score = 120 bits (132), Expect = 8e-22 Identities = 398/602 (66%), Gaps = 24/602 (4%) Strand=Plus/Plus Query 111360 GAAGAACTTCTGTGGTTTATTCGCGGAAGTACAAATGCAAATGAACTTGCAGCAAAAA-A 111418 || ||| | |||||||| ||| | || ||| | ||| || || |||||| || | Sbjct 88177 GAGGAATTACTGTGGTTCATTAGTGGGGATACGAGTGCGCATACGCT-GCAGCAGAAGGA 88235 Query 111419 TGTAAAAATTTGGGATGGAAATGGATCACGTGACTTTCTAGATTCAGT--TGGTCTT--G 111474 | | || |||||||| |||||||| || || | | | || |||| ||| || | Sbjct 88236 CATTCATATCTGGGATGGCAATGGATCGCGAGAGTATTTGGA--CAGTCGTGGACTGCAG 88293 Query 111475 TCGACAACGAAGAAGGTGATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTG 111534 |||| |||| ||| || || |||||||| || ||||| || ||||| |||||||| | Sbjct 88294 TCGAGG--GAAGTAGGAGACCTGGGACCAGTGTATGGATTCCAGTGGCGTCACTTTGGAG 88351 Query 111535 CAGACTACAA----AACCATGCACGACTCATATGATTCACAGGGAACTGATCAA-TTACA 111589 | | |||| | |||||| |||| || |||||| |||||| || | Sbjct 88352 CCAAGTACACGGATATGCATGCA-GACTACACTGG---ACAGGGGGTGGATCAACTTGCT 88407 Query 111590 GAATGTCATTGATCAAATTAAGAACAA-CCCAACTTCTCGTCGCATTATTATGAGTGCAT 111648 || || || | |||| || | |||| ||| || ||||| ||| | || ||| | Sbjct 88408 GAG-GTGATCCA-CAAACTACGCACAAACCCGACCGACCGTCGGATTGTGTTGTCTGCGT 88465 Query 111649 GGAACCCAAATGCATTGGAAAAAATGGCACTTCCACCATGTCATCTTATGTGCCAGTTTT 111708 |||| ||| | | | | ||||| || ||||||||||| | | || ||||||| Sbjct 88466 GGAATCCAGCGGATCTCAATGAGATGGCGCTGCCACCATGTCACATGTTTTGTCAGTTTT 88525 Query 111709 ATGTACACGACGGGATGCTTTCATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTG 111768 | || || || | | || || || ||||| ||||| || ||||| || || || | Sbjct 88526 ACGTGGCGGATGGCGAGTTATCGTGTCAGATGTACCAGCGTTCGGCTGACATGGGCCTCG 88585 Query 111769 GTGTTCCGTTTAATATTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCATTTTACAA 111828 | || ||||| || || || ||||| || ||||| || | | | || || | | Sbjct 88586 GCGTGCCGTTCAACATCGCCAGTTATGCGCTACTGACGCGACTTGTGGCCCAAGTGGCTG 88645 Query 111829 ATCTCAAACCGGGTGAATTCATTCACGTTATCGGAGATGCGCATGTTTACACAAACCACA 111888 | | ||||| || ||||| || ||| |||| || ||||| || || ||| |||||| Sbjct 88646 GTTTGAAACCTGGCGAATTTATCCACATTATTGGTGATGCACACGTATACCTGAACCACG 88705 Query 111889 TTGATGCACTTAAAACACAGTTGAAGCGCAAACC-ATACGATTTCCCAACGATTCATATC 111947 | || | ||| ||| |||| | | ||||| || || | ||||| ||| | || ||| Sbjct 88706 TAGAGCCGCTTCAAAAACAGCTAACGCGCACCCCGCGACCA-TTCCCCACGTTGCACATC 88764 Query 111948 AA 111949 || Sbjct 88765 AA 88766 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303269669730332