Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F000448265.2_202016-06- 02] 5,026 sequences; 39,481,229 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq4688 159 3e-34 seq4807 141 9e-29 seq3693 107 2e-18 seq2815 96.9 3e-15 >seq4688 Length=42416 Score = 159 bits (176), Expect = 3e-34 Identities = 737/1148 (64%), Gaps = 40/1148 (3%) Strand=Plus/Plus Query 145051 GTACTGATTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGT 145110 ||||| || |||| |||||| || || | ||| || || |||| |||||| || Sbjct 39856 GTACTTGTTCACGATGGTAAACTCTCCCGCAAGCACGCGGCGGTTGTACATGTTAGAGGT 39915 Query 145111 GAAGGGTTCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTA 145170 ||| ||||| | |||||||||||| || ||||| || || || | || || ||||| Sbjct 39916 GAACGGTTCGATAGACTCGTTATTACCGAGGATCTGTGCCGTAGACGCCGTCGGCATCGG 39975 Query 145171 CGCCACCAATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCA 145230 ||| |||| | |||||||||||||||| ||| | | ||||| |||| | |||| Sbjct 39976 CGCGACCAGGAGCGAATTGCGCAGGCCGTTCTTGACCACCTTCTCCTTAAGCGCAGCCCA 40035 Query 145231 ATCCCATAG---CGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCT 145287 ||||| || || | ||| | |||| |||||| ||| |||| || || |||| ||| Sbjct 40036 GTCCCACAGACCGGAGGAAGGCGTGACGTTCCACATATCGAACTGGAAGATACCCTTGCT 40095 Query 145288 GGC-GGGGCTGCCTTGAAAGGAACTGTAACTGCCCCAAGT-TTTGGCGAGCTCGCAACTC 145345 ||| || | ||| ||||| || || | ||||| | |||| || || | Sbjct 40096 GGCAGGCGAACCCTGGAAAG--TCTCGTACGGGCCCAATTCCGTGGCCAGTTCCATTGAC 40153 Query 145346 GCCTCCAGAGCGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTTCA 145405 | ||||| || || | || || |||||| || | | |||||||| ||| || Sbjct 40154 GTCTCCATAGAAGCGTAGTAGATGGTCTCGAAGATATTCTTGTTGAGCTCACGCGCCTCC 40213 Query 145406 TCGCTCTCGTACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACG 145465 |||||| ||| | | || || | ||||| || || || ||||| | || | Sbjct 40214 GGACTCTCGAACGCAAAGTCCATGAGGATGAAAGCGTCCGCAAGGCCCTGCACACCAATA 40273 Query 145466 CCGATGGGCCGATGTTTCATGTTGCTCATCCTCGCCGACTCGATA---GGATA-TCGATT 145521 || | || || || ||||||| | | || ||| ||| || || | | | Sbjct 40274 CCAACAGGACGGTGACGCATGTTGGAATTGCGAGC---CTCAATAACGGGGTAGTAGTTG 40330 Query 145522 ACGGTCGATAATTTTATTCAAGTTTCGCACTACTACCTTTGTAATGTGCCGCAACTTTTC 145581 || |||||| | || |||| ||| || | ||||| | | || ||| | Sbjct 40331 AC-GTCGATGACCTTGTTCAGGTTGCGTGTGATCACCTTGACGACATCATACAGCTTCTT 40389 Query 145582 AAAGTCAAACCGAGCCTCGTCAACGACCACACAGCTATTGACGGCGATCGACGCCAAATT 145641 ||| || || | ||||||| | | || || | |||||||| || Sbjct 40390 GTAGTTGAATACGGCGTTCTCAACGA------ACTTGGGGAGCGCCACGGACGCCAAGTT 40443 Query 145642 ACAAACTGCCGTCTCCTC-GGCGTCGCTGTATTGTACGATCTCGGCGCACAAATTGCTAC 145700 || || ||| ||| || |||| || | || | | | || |||||| ||||| Sbjct 40444 GCACACGGCCACCTCATCAGGCGACG-TATACTCCATCACTTCACAGCACAAGTTGCTCG 40502 Query 145701 ATTTGATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCA 145760 | || || || || || ||||||||| || | |||| ||||||||||| | || Sbjct 40503 AGCGAATCGTGCCGAGGTTCTGCTGATTAGACTTGCGGTTGGCGGCGTCCTTGTATAACA 40562 Query 145761 TGTACGGTCCGCCAGTCTCCACCTGCGTCTCCACGATA--AAACGGTGCAAGTCCTGCGC 145818 || | || |||| ||||| | ||||| |||| ||| ||| || | || || Sbjct 40563 TGAAAGGCACGCCCGTCTCAATCTGCGCGTCCAGAATAGCGAAC--CACAGCTGTTGAGC 40620 Query 145819 ACGCACCTGCTGCTGGTAGCGGCCCTCTTCTTCGTATTTCCTGTAGAGCTCCTCAAACGC 145878 | | || || |||||| || ||||| ||| | ||| ||| ||| | Sbjct 40621 ATTGATTGTCTTGCGGGCGCGGCCTTCACGCTCGTACTTCTCAAACAGCGTCTCGAACTC 40680 Query 145879 GGAACCGTAGCAATCGGACAGGCCGGGACACTTGTTGGGACACATCAGCGACCATACGCC 145938 || |||| ||| |||| |||||| || ||||||||| | || ||| ||| Sbjct 40681 CTCTCCCCAGCACTCGTACAGACCGGGAGCCTCGTTGGGACAGAACAAACTCCACTTGCC 40740 Query 145939 GTTGGCGTTGACGCGCTCCATAAACAAATCTGGCACCCACAGCGCGTACATCAAGT--CG 145996 ||||| | || |||| ||| || | ||| ||||||||||| || || | ||||| || Sbjct 40741 ATTGGCCTCCACACGCTTCATGAATAGATCCGGCACCCACAGAGCATAGAACAAGTCACG 40800 Query 145997 CGCGCTTTGCAATCCTCAGCACCCATGTTTC--GCTTCAAAT-TAAGCACACTATAGATG 146053 || | |||| ||| | ||||| ||| || || || ||| || | | | | Sbjct 40801 TGCACGGTGCA--GCTC-GTTACCATGGTTCTTGC-GCAGATCCAAGAACTC-AAACACA 40855 Query 146054 TCCGCGTGCCACGGTTCAATATAGACGGCGAGGGCTCCTTTTCGTTT---GCCACCCTGG 146110 || |||||||||||||| | ||| | || | | ||| || ||||| ||||||||| Sbjct 40856 TCAGCGTGCCACGGTTCCAGATAAATCGCAAATGATCCCTTGCGTTTACCTCCACCCTGG 40915 Query 146111 TCCACGTGACGTACCATGTTGTTAAAGACGCGCACCATGGGCTCGACGCCGCTGGCTACG 146170 ||||||| |||| || | | |||||| || |||| |||||| || |||| ||| | Sbjct 40916 TCCACGTAACGTGCCGTATCGTTAAACACTCGCAGCATGGGGATGATGCCGTTGGACGAG 40975 Query 146171 CCGTTCGT 146178 |||||||| Sbjct 40976 CCGTTCGT 40983 >seq4807 Length=216255 Score = 141 bits (156), Expect = 9e-29 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || |||| || ||||| | || | || |||||||| || |||||||| |||||| Sbjct 306 CCGCCACGCAGGCGAAGCACCAGGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTC 247 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| |||||| ||||||||||| ||| |||| | |||||||||||| || ||| Sbjct 246 AGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGG 187 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| |||||||||||| | | || | | || | | ||| | | Sbjct 186 ATGCCTTCCTTGTCTTGGATTTTCTGCTTCACATTGTCGATCGAGTCCGAAGGCTCCACG 127 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 |||| || | ||| || || || || || || ||||| ||||||||| Sbjct 126 TCGAGCGTGATGGTCTTGCCCGTCAGTGTCTTCACGAAGATCTGCATG 79 >seq3693 Length=10515 Score = 107 bits (118), Expect = 2e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 131045 CCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGA 131104 |||| || |||||||| || | ||||| |||||| ||||||||||| ||| ||| Sbjct 8307 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 8248 Query 131105 TTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCT 131164 | | |||||||||||| || || ||||| || ||||| |||||||||||||| | | Sbjct 8247 TCAGACGCTGCTGGTCAGGCGGAATTCCCTCCTTGTCCTGGATTTTCTGCTTGACATTGT 8188 Query 131165 CCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224 | | | || | | ||| | ||||| || | ||| || || || || || || || | Sbjct 8187 CAATGCTGTCCGACGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAA 8128 Query 131225 AAATCTGCATGA 131236 | |||||||||| Sbjct 8127 AGATCTGCATGA 8116 >seq2815 Length=67856 Score = 96.9 bits (106), Expect = 3e-15 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| ||||||||| | || | || |||||| || |||||||| || | Sbjct 8767 CCACCACGCAGACGCAGCACCAGGTGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCCGAC 8826 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| |||||| ||||||||||| ||| |||| | |||||||||||| || ||| Sbjct 8827 AGAGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGG 8886 Query 131128 ATTCCT 131133 |||||| Sbjct 8887 ATTCCT 8892 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471983145795840