Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F000448265.2_202016-06- 02] 5,026 sequences; 39,481,229 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq1736 113 3e-20 seq1692 113 3e-20 seq3708 98.7 7e-16 seq3586 86.0 4e-12 seq2121 86.0 4e-12 >seq1736 Length=204 Score = 113 bits (124), Expect = 3e-20 Identities = 71/77 (92%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 96 CTCTCTTTTCAAAGTTCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 155 Query 20007 GGTAATATTTAGCCTTA 20023 |||||||||| ||| Sbjct 156 ACCAATATTTAGCTTTA 172 >seq1692 Length=204 Score = 113 bits (124), Expect = 3e-20 Identities = 71/77 (92%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 118 CTCTCTTTTCAAAGTTCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 177 Query 20007 GGTAATATTTAGCCTTA 20023 |||||||||| ||| Sbjct 178 ACCAATATTTAGCTTTA 194 >seq3708 Length=331 Score = 98.7 bits (108), Expect = 7e-16 Identities = 69/79 (87%), Gaps = 5/79 (6%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||| ||||||||| ||||||||||| || |||||| | Sbjct 253 AAGCCCGTTCCCTTGGCTGTGGGTTCGCTAGACAGTAGATAGGGACAGTGGGAATCTCAT 312 Query 25957 TAATCCTTTCATGCGCGTC 25975 |||||| |||||||||||| Sbjct 313 TAATCCATTCATGCGCGTC 331 >seq3586 Length=263 Score = 86.0 bits (94), Expect = 4e-12 Identities = 64/75 (85%), Gaps = 5/75 (7%) Strand=Plus/Minus Query 25922 GGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTAATCCTTTCATGCGCGTCA 25976 || ||||||||| ||||||||||| || |||||| ||||||| ||||||||||||| Sbjct 263 GGGTTCGCTAGACAGTAGATAGGGACAGTGGGAATCTCATTAATCCATTCATGCGCGTCA 204 Query 25977 CTAATTAGATGACGA 25991 ||| ||||||||||| Sbjct 203 CTAGTTAGATGACGA 189 >seq2121 Length=263 Score = 86.0 bits (94), Expect = 4e-12 Identities = 64/75 (85%), Gaps = 5/75 (7%) Strand=Plus/Minus Query 25922 GGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTAATCCTTTCATGCGCGTCA 25976 || ||||||||| ||||||||||| || |||||| ||||||| ||||||||||||| Sbjct 263 GGGTTCGCTAGACAGTAGATAGGGACAGTGGGAATCTCATTAATCCATTCATGCGCGTCA 204 Query 25977 CTAATTAGATGACGA 25991 ||| ||||||||||| Sbjct 203 CTAGTTAGATGACGA 189 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334926683018606