Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F000448265.2_202016-06- 02] 5,026 sequences; 39,481,229 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq4314 161 1e-34 seq4688 118 1e-21 >seq4314 Length=236279 Score = 161 bits (178), Expect = 1e-34 Identities = 403/608 (66%), Gaps = 7/608 (1%) Strand=Plus/Minus Query 32653 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 32712 ||| || ||| || || || ||| | ||| || || | |||||| | |||||||| | Sbjct 45932 ACAACAGACAAGCAAAGTCTGTGTGCATACCTTCATCACGACTAATGAGCTCGTTGGAGA 45873 Query 32713 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAG 32772 | | || || ||||| || |||||||| || ||||| || ||||| ||| || || | Sbjct 45872 AGCTCAGACCAGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAGCAAAAGGAGCCCG 45813 Query 32773 AAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGG-CGCTG 32831 | ||||| ||||| || || || ||||| || | ||| | ||| || || | || Sbjct 45812 AGAAGAAGATTCCCTCCACAGCTGCAAATGCCAGAAGACGCTCCGGGTATGAGGACACTT 45753 Query 32832 TCATGTATC--CACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTA 32889 || || | || || | |||||| |||||||| | ||||| || || ||||| | Sbjct 45752 TCGGGTCGCACCATCTTAGCGCCCAACTCGCCTTCTTGGTCACACACGGGATGGTCTCAA 45693 Query 32890 TAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGAC 32949 | ||| | || | || || || | || || | || || ||||| | || Sbjct 45692 TTGCACGCAGCAGGTGGTCCTTCTCCACAGCGTCCTTGATGTACGTGTCAATGAGCAGCG 45633 Query 32950 TATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCT 33009 |||| || || || ||||| |||||||| ||||| || ||||||||||| | ||||| Sbjct 45632 AGTACACCTCTGAGTGGATGTTCTCAATGGCAATTTGGAAGCCGTAGAAGCAACGAGCCT 45573 Query 33010 CGGTAATCTGTACTTCTGTACAAAATCGTTC--TGCTAAATTTTCATTCACTATTCCGTC 33067 | | | ||||||||| | | ||| |||| || | || || ||||| || || || Sbjct 45572 CAGGCACCTGTACTTCATTGCTAAA--GTTCATAGCCAGGTTCTCGTTCACGATGCCATC 45515 Query 33068 ACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTT 33127 |||||| ||||| || ||||| || || || || || | |||| ||| || || Sbjct 45514 ACTGGCGGCAAAGAAGGCCAAGACGTGCTTGATGAAGTGACGCTCGTTGTCTGTGAGGTT 45455 Query 33128 ATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTC 33187 ||| || |||| || | | |||| |||||| | ||||| || ||||| Sbjct 45454 TCCCCAGTCCTTGAGGTCGTGTACCAAGTCCAGCTCTTCCGCAGTCCAGAAGCTGGCCTC 45395 Query 33188 TGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATT 33247 ||||| || ||||| | ||| | ||| || | || || || || | || || | || Sbjct 45394 CGCCTTCTTGTACATCTGCCACACGTCGTGCTCCTGGATGGGGAATAGCACGAAGCGGTT 45335 Query 33248 TGGATTTT 33255 || |||| Sbjct 45334 CGGGTTTT 45327 >seq4688 Length=42416 Score = 118 bits (130), Expect = 1e-21 Identities = 465/727 (64%), Gaps = 6/727 (1%) Strand=Plus/Plus Query 62993 TCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGAC 63052 |||||||| |||||||| | || ||| || ||| || | ||||| | ||| | Sbjct 40673 TCGAACTCCTCTCCCCAGCACTCGTACAGACCGGGAGCCTCGTTGGGACAGAACAAACTC 40732 Query 63053 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AA 63111 |||| || | ||| ||| || ||||| || ||||| || | ||| ||||| ||| || Sbjct 40733 CACTTGCCATTGGCCTCCACACGCTTCATGAATAGATCCGGCACCCACAGAGC-ATAGAA 40791 Query 63112 TAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 63171 | || | | | || |||||| || ||||| ||||| | |||| | | Sbjct 40792 CAAGTCACGTGCACGGTGCAGCTCGTTACCATGGTTCTTGCGCAGATCCAAGAACTCAAA 40851 Query 63172 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCC 63231 | ||||| ||||||||||||| || || || | ||| ||||| ||| || Sbjct 40852 CACATCAGCGTGCCACGGTTCCAGATAAATCGCAAATGATCCCTTGCGTTTACCTCCACC 40911 Query 63232 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 63291 ||| || | ||| | || || | ||| | |||| || ||| || || || || ||||| Sbjct 40912 CTGGTCCACGTAACGTGCCGTATCGTTAAACACTCGCAGCATGGGGATGATGCCGTTGGA 40971 Query 63292 TGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATAT--TACTAATTGATAGA 63349 | || || || || ||| ||||| | | || || || | | | | |||| Sbjct 40972 CGAGCCGTTCGTGCCGCGGATGTAGCTGTTAGTAGCTCGGATGTTGTGCATACTGAT--G 41029 Query 63350 CCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCC 63409 || || || |||||| || ||||| | || || |||| | || ||||| ||||| Sbjct 41030 CCAATGCCTCCTGCCCACTTGGAGATGCACGCACACTGTTTCAGAGTGTCATAAATGCCT 41089 Query 63410 TCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTT 63469 || ||| |||||| |||| | | || || ||||| ||| |||| || Sbjct 41090 TCAATAGAGTCATCCTGCATGGCCAACAAGAAGCACGAAGACAATTGTGGACGTGGGGTA 41149 Query 63470 CCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTAC 63529 || ||||| || | || || | ||||| || || |||||| || | || | ||| Sbjct 41150 CCAGCATTGAACAGCGTGGGGGTGGCGTGGGTGAAGAATTTTTGCGACATGAGTTCGTAA 41209 Query 63530 GTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATG 63589 ||||||| || | | || | | | || || |||| || || ||||| | ||| Sbjct 41210 GTCTCAAGTGCCGCCTTGATGTTCGTCTTGTGGATGCCTAGAGCCACGCGCATGATCATC 41269 Query 63590 TGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTT 63649 ||||| || | ||| || | ||| || | || | || | |||| || Sbjct 41270 TGCTGGGGACGTTCCACCACTTTGCCGTGGACACGGAAGAGATATCCCCTCTCCAGTGTC 41329 Query 63650 TTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTA 63709 ||||| |||||||| | |||| ||||||||| || | ||||| ||||||| |||| Sbjct 41330 TTAAAGCCAAAATAATCGTATTCAAAGTCTCGGTCATGGATAATGGCCGAGTTCAGTTGG 41389 Query 63710 TCCTTAT 63716 || |||| Sbjct 41390 TCTTTAT 41396 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633592192069600