Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F000448265.2_202016-06- 02] 5,026 sequences; 39,481,229 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq4314 221 2e-52 seq4378 183 6e-41 seq3030 102 2e-16 seq2734 102 2e-16 seq261 102 2e-16 >seq4314 Length=236279 Score = 221 bits (244), Expect = 2e-52 Identities = 576/862 (67%), Gaps = 31/862 (4%) Strand=Plus/Minus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| |||| |||||||| |||||||| | ||||| |||| || ||||| || Sbjct 46191 TCGAAGAAGTTAGTCTTGCCCTGTAGAGAGATCATGTCCATCCAGTCAAACGGGTTCTTG 46132 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGC-TACGAAGATGCGGTCTGCCACAAACTCCAG 251681 | ||||| ||||| ||||| | ||| | | |||||||||||| ||||| | Sbjct 46131 ACGTTGTAGATCTTGGACACACCAAGCGAATAC-AGCAGGCGGTCTGCCACGAACTCAAT 46073 Query 251682 ATACTGTCCCATCAGTTCAGAGTTCATGCCAATCATA-CGACAAGGA---ATTGCCTCAC 251737 ||||| | ||| || | ||||||||||| |||| | || ||| | | ||||| Sbjct 46072 GTACTGGCACATGAGCGCCGAGTTCATGCCGATCAGCTCCACTGGGAGCGAGTCGCTCAC 46013 Query 251738 AGATGAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCAC---CTGTGCCA 251794 | || || | |||| | || || || | ||| | | ||| ||| || Sbjct 46012 A----AACTCGTGTTCGATCTTCACAGCGTCACGGATAATCTCGTGCACACGCTGCTCCG 45957 Query 251795 GAGACAGCTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCT 251854 | ||||||| || ||||||| ||||||| || |||| | | ||||| ||| | Sbjct 45956 G---CAGCTTGGTCACCAGCTTCGAGTACAACAGACAAGCAAAGTCTGTGTGCATACCTT 45900 Query 251855 CGTCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGA 251914 | || ||||| |||| ||||||||| | | ||| |||||||| | ||||| ||| ||| Sbjct 45899 CATCACGACTAATGAGCTCGTTGGAGAAGCTCAGACCAGGCATGAGACCACGCTTCTTGA 45840 Query 251915 GCCAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAA 251974 |||||||||| | ||||||||| || ||||| | | ||||| ||| | |||| | Sbjct 45839 GCCAGAAGATGGAGCAAAAGGAGCCCGAGAAGAAGATTCCCTCCACAGCTGCAAATGCCA 45780 Query 251975 CAAGGCGCTCAGCAAACG-----ACTTGTCCTGCGACAAGAACTTCTGTGCCCATGCTGC 252029 ||| ||||| | | | |||| || | || | ||| | ||||| || Sbjct 45779 GAAGACGCTCCGGGTATGAGGACACTT-TCGGGTCGCACCATCTT-AGCGCCCAACTCGC 45722 Query 252030 CTTCTTTCCAACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCCGCTCGGCATC 252089 |||||| || ||||| || || |||||| | || || | ||| || | Sbjct 45721 CTTCTTGGTCACACACGGGATGGTCTCAATTGCACGCAGCAGGTGGTCCTTCTCCACAGC 45662 Query 252090 GTCCTCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATGGATTCGTTGAA 252149 ||||| |||| || |||| || || ||||||| ||| || |||||| || || Sbjct 45661 GTCCTTGATGTACGTGTCAATGAGCAGCGAGTACACCTCTGAGTGGATGTTCTCAATGGC 45602 Query 252150 CATCTGGTAAGCATAGAATAGACGCGCGGAAGGGTCGGTGACTTCCGTGGAAAAGTTGTT 252209 || ||| | | ||||| ||| || ||| | ||||| || |||||| | Sbjct 45601 AATTTGGAAGCCGTAGAAGCAACGAGCCTCAGGCACCTGTACTTCATTGCTAAAGTTCAT 45542 Query 252210 TGCAATGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAA-GCCAAGAATGGTCTTGA 252268 || | |||||| |||| |||||||| ||| | |||||||| |||||| | | ||||| Sbjct 45541 AGCCAGGTTCTCGTTCACGATGCCATCACTGGCGGCAAAGAAGGCCAAG-ACGTGCTTGA 45483 Query 252269 TGAAGTGACGCTCATCGTCGTTGAGCTTGTCACGCCAGTCGGCAATGTCCTGATTCAGAG 252328 ||||||||||||| | ||| |||| || | |||||| | ||| || || Sbjct 45482 TGAAGTGACGCTCGTTGTCTGTGAG---GTTTCCCCAGTCCTTGAGGTCGTGTACCAAGT 45426 Query 252329 GAACTTCTTCCACCGTCCAGAATGTGGACACCGCCTTCTTGTACAT-TGCGAACACATCA 252387 | |||||| | |||||||| ||| | |||||||||||||||| ||| |||| || Sbjct 45425 CCAGCTCTTCCGCAGTCCAGAAGCTGGCCTCCGCCTTCTTGTACATCTGC-CACACGTCG 45367 Query 252388 GGGTACTTGATTGGGAA-AGCA 252408 | | || ||| ||||| |||| Sbjct 45366 TGCTCCTGGATGGGGAATAGCA 45345 >seq4378 Length=48165 Score = 183 bits (202), Expect = 6e-41 Identities = 662/1020 (65%), Gaps = 33/1020 (3%) Strand=Plus/Minus Query 279350 GGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAACTCTAC 279409 ||| || || ||||||| ||||||||||| || ||||| | ||||||||| ||| | Sbjct 15365 GGACCTTTGCAACTGTGAGTTCTCGCTCGCTTACGGTGGTATGATTCTGCTGAACAACGC 15306 Query 279410 CCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCGGGTAA 279469 ||| || | | ||||||||| |||| || ||||| ||||||||| || ||||| Sbjct 15305 CCGTCTTCGCCTAAAGCGTGGCCACCGTTACGGTCTGTGCGGTCCCAACGGTTGCGGTAA 15246 Query 279470 GAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCC-TAACGCATCTG 279528 | || || |||||||||||| | ||||| ||||| || || || || | ||| | | Sbjct 15245 GTCTACGCTTATGCGCGCCATTTCCAACGGCCAGCTTGACGGCTTCCCGTCGCGCGAC-G 15187 Query 279529 AGGTAAGGACAGTGTATGTAGAGCACGACATCGACTCCTCTCTCTCGGATAGCACTGTGT 279588 || | | ||| |||| || |||||| || | | | || | || | || Sbjct 15186 AGCTGAAGACTGTGTTCGTCGAGCACAACTTGCAAGCTTCGGAGGCCGAGCTGTCCGTTG 15127 Query 279589 TCGACTTCCTAACGTCTGACAATCAGGTTATGGAAATCAGCTCTCCTGAGGAAATCATCC 279648 | |||||| | || ||| | | | | ||| | | ||| || |||| || | Sbjct 15126 TGGACTTCATCCTGTTTGATGAGGACCTGAAGGACA-CTCCTCGCC--AGGAGGTCGTTG 15070 Query 279649 AGAAACTGGAGGCCAATGGTTTTGATGAAAGA-ATGCGTAATCTGCCAGTAGGTTCTCTG 279707 | | || | | ||| || | || |||| | | | || || | || Sbjct 15069 ACACGCTTACCGGCG-TGGACTTCACCGCTGAGATGCAAGCCCAGGCTGTGGGCACCCTT 15011 Query 279708 TCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGTGCCGATGTC 279767 |||||||||||||||||||| |||| || | || || || || | | ||||| | Sbjct 15010 TCGGGTGGTTGGAAGATGAAACTGGAGCTGGCCCGTGCTATGCTTCAGAAGGCCGACATT 14951 Query 279768 CTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGGCTAGTGTCC 279827 || || ||||||||||| || |||||| |||| || ||||| || ||||| | | | Sbjct 14950 CTGCTTCTTGATGAGCCGACGAACCACTTGGATGTCAAGAACGTTGCGTGGCTCGAGAAC 14891 Query 279828 TACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCTGGCTTCCTA 279887 ||||| || | ||| ||| || | | |||| || || |||||||| ||||||| Sbjct 14890 TACCTGACGAACCTGCCGAACGTGACGAGCATCATGGTGTCCCACGACTCCAGCTTCCTT 14831 Query 279888 GATGCCGTGTGCTCTGCCATCATTCACTATGAG---CAAAATCTGAAGCTCTCCAAGCAC 279944 || | || || || |||||||||||| ||| | || |||||| ||| |||| Sbjct 14830 GACACGGTCTGTACTAACATCATTCACTACGAGACCCGTAAGCTGAAGATCTACAAG--- 14774 Query 279945 ATCGGCAACCTGTCTGCTTTCGTGGCAAAGCGCCCTGAGGCGGCCGCCTACTATGACCTG 280004 |||||||| || ||||||| | |||||||| |||||||| || ||| Sbjct 14773 ---GGCAACCTTTCCAAGTTCGTGGAGGTGAAGCCTGAGGCCAAGGCCTACTACGAGCTG 14717 Query 280005 AAGGACGCCACCGCCAAGTGGGAATTCCCTGAGCCAGGGTTTCTGGAGGGCATC-ACATC 280063 ||| || ||| || | ||||| ||||| || || || | | |||| | | | Sbjct 14716 GAGGCTGCTACCTTCAGATTCACGTTCCCGGAGCCTGGTTTCCTTGCTGACATCAAGAAC 14657 Query 280064 AAAGGATCGCGCAATCATGAAGCTCCGTGGCGTCTCCTTTGCTTATC---CCAATGGCCC 280120 || || || | |||| | ||| | || | | || | | ||||| Sbjct 14656 AAGGGTAAGC-CCATCA------TTCGTCTGACCAACTGTACCTACCAGTACCCTGGCCG 14604 Query 280121 CAAC--ATCTTC-AGCAGTGTCAACTCG--CAGGT-TTCTATGAACTCACGGATTGGTGT 280174 || | | || | || || ||| | || || || || || |||| || Sbjct 14603 TGACAAACCGTCGATCAACAACATTTCGGTGACGTGCGCTCTGTCATCGCGTATTGCCGT 14544 Query 280175 CATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCCA 280234 |||| ||||| ||||| |||||||| || || ||||| | ||||| || ||| | Sbjct 14543 GCTTGGCCCCAACGGTGCCGGTAAGTCGACGCTGATCAAGATGCTGACGGGTGAGGTTGA 14484 Query 280235 GGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAGCA 280294 |||| | || | || |||||||| || |||||| | ||||||||||||||||| Sbjct 14483 ACCCACCGTCGGTACGGTATGGAAGCACCCTTCCATGCGTTTCGCTTACGTCGCTCAGCA 14424 Query 280295 CGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTGGCG 280354 ||||||||| ||||| || | ||||| ||| |||| | ||| |||||||||||||| Sbjct 14423 CGCTTTCCATCACATTGAAGAGCACCTCGACGAGACTGCCAACGCCTACATTCAGTGGCG 14364 >seq3030 Length=322 Score = 102 bits (112), Expect = 2e-16 Identities = 62/66 (94%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||| Sbjct 321 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCGAG 262 Query 142563 CCCCAC 142568 |||||| Sbjct 261 CCCCAC 256 >seq2734 Length=2803 Score = 102 bits (112), Expect = 2e-16 Identities = 62/66 (94%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||| Sbjct 2474 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCGAG 2415 Query 142563 CCCCAC 142568 |||||| Sbjct 2414 CCCCAC 2409 >seq261 Length=258 Score = 102 bits (112), Expect = 2e-16 Identities = 62/66 (94%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||| Sbjct 74 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCGAG 15 Query 142563 CCCCAC 142568 |||||| Sbjct 14 CCCCAC 9 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027770611806866