Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F000448265.2_202016-06- 02] 5,026 sequences; 39,481,229 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq4314 194 3e-44 seq4378 158 2e-33 seq4807 127 4e-24 seq2373 122 2e-22 seq4141 114 2e-20 seq3030 95.1 2e-14 seq2734 95.1 2e-14 seq261 95.1 2e-14 >seq4314 Length=236279 Score = 194 bits (214), Expect = 3e-44 Identities = 615/935 (66%), Gaps = 25/935 (3%) Strand=Plus/Minus Query 9893 TTAGAAGTCTGCGTCAATTGCAAACACGTTGTCGTCGGCATTCATG---ACGCCCGCCTT 9949 ||| ||||| ||||||| || || || | || ||||| | ||||| ||||| Sbjct 46273 TTAAAAGTCGGCGTCAAGTGTGAATACCTGCTCCTCGGCCGCAACACCCACGCCTGCCTT 46214 Query 9950 CTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTCGAGGGAAATGAGCTC 10009 |||||| || || |||||||||||| | |||||||| || || || | || Sbjct 46213 GGAGTACTCGCCCACACGCTTCTCGAAGAAGTTAGTCTTGCCCTGTAGAGAGATCATGTC 46154 Query 10010 CATGAAGTCAAAGGGGTTCTCGGCGCCAAACTGCTTGGGGTAACCGAGTGCTGTGAAAAT 10069 ||| ||||||| ||||||| | || | ||||| ||| || | | | Sbjct 46153 CATCCAGTCAAACGGGTTCTTGACGTTGTAGATCTTGGACACACCAAGCGAATACAGCAG 46094 Query 10070 GCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAGTTCATGCCAATCATGCG 10129 |||||| ||||||||||| |||||||||| ||| || ||||||||||||| |||| || Sbjct 46093 GCGGTCTGCCACGAACTCAATGTACTGGCACATGAGCGCCGAGTTCATGCCGATCA-GCT 46035 Query 10130 GCAG-GGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGACCGCTTCCTCGACGATGC 10188 || |||| | ||||| | || || | |||| | || || || || || | Sbjct 46034 CCACTGGGAGCGAGTCGCTCACAAACTCGTGTTCGATCTTCACAGCGTCACGGATAAT-C 45976 Query 10189 TCTTTACCACG-TCAAGGGACAGCTTGTTCTCGAGCTTCGAATACAGGAGCTCTCCAAAC 10247 || | |||| | | ||||||| || | |||||||| |||| || |||| Sbjct 45975 TCGTGCACACGCTGCTCCGGCAGCTTGGTCACCAGCTTCGAGTACAACAGACAAGCAAAG 45916 Query 10248 TGCTG-GTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTGGACAAACCCAGACCGGGCAT 10306 | ||| ||| | || || || || || |||| ||||||||| || | |||||| ||||| Sbjct 45915 T-CTGTGTGCATACCTTCATCACGACTAATGAGCTCGTTGGAGAAGCTCAGACCAGGCAT 45857 Query 10307 GAGCCCCCGGTTGCGCAGCCAGAAAATGGCGCAGAACGACCCGGAGAACAGAAGA--CCC 10364 ||| || || || |||||||| |||| ||| || || || ||||| ||||| ||| Sbjct 45856 GAGACCACGCTTCTTGAGCCAGAAGATGGAGCAAAAGGAGCCCGAGAA--GAAGATTCCC 45799 Query 10365 TCCACGCACACCCAGGCGACGAGGCGCTCTGCGAAGGAG----CGGTCGCG-CGAAAAGT 10419 ||||| | | || | || ||||| | | | ||| | ||| | || | | Sbjct 45798 TCCACAGCTGCAAATGCCAGAAGACGCTCCGGGTATGAGGACACTTTCGGGTCGCACCAT 45739 Query 10420 ATTTCGAGGCCCACGCTGCCTTCTTTCCCACGGCAGGGATCGTCTCGATAGCCTCGAAG- 10478 || | | || || | |||||||| ||| ||||| ||||| || || || || Sbjct 45738 CTTA-GCGCCCAACTC-GCCTTCTTGGTCACACACGGGATGGTCTCAATTGCA-CGCAGC 45682 Query 10479 AGCTTGTTACGCTCGGTCTCGTCCTCAATAAGAGCATCAAGGAGCAGGGAGTATTGCTCG 10538 || | || ||| |||||| || | |||| |||||| ||||| ||| Sbjct 45681 AGGTGGTCCTTCTCCACAGCGTCCTTGATGTACGTGTCAATGAGCAGCGAGTACACCTCT 45622 Query 10539 CTGTGGACGCTCTCATTGTACCCCTGGTAAGCGTAGAACATACGTGCCGAGGGGTCCGTG 10598 ||||| | ||||| || ||| | ||||||| ||| ||| || || Sbjct 45621 GAGTGGATGTTCTCAATGGCAATTTGGAAGCCGTAGAAGCAACGAGCCTCAGGCACCTGT 45562 Query 10599 ACTTCCTCGGCAAAGTTGTTGTTCAGGTTCTCCATCACCATGCCATCGCTGCCTGCAAAG 10658 ||||| | | |||||| | ||||||||| |||| |||||||| ||| | |||||| Sbjct 45561 ACTTCATTGCTAAAGTTCATAGCCAGGTTCTCGTTCACGATGCCATCACTGGCGGCAAAG 45502 Query 10659 AAGCCGAGGATGTGCTTGATGAAGTGGCGCTCATCATCGTTCAGTTTTTCACGCCAGTCT 10718 ||| | | || ||||||||||||||| ||||| | || | || ||| | |||||| Sbjct 45501 AAGGCCAAGACGTGCTTGATGAAGTGACGCTCGTTGTCTGTGAGGTTT---CCCCAGTCC 45445 Query 10719 ACCACATCCTGGTTGAGCTGGACCTCCTCCACGGTCCAGAAAGTGGCAACGGCCTTCTTG 10778 | || || | | | ||| ||| | |||||||| |||| | ||||||||| Sbjct 45444 TTGAGGTCGTGTACCAAGTCCAGCTCTTCCGCAGTCCAGAAGCTGGCCTCCGCCTTCTTG 45385 Query 10779 TACATCTGGAAAATGTCGGGGTACCGGATGGGGAA 10813 |||||||| | | |||| | | | |||||||||| Sbjct 45384 TACATCTGCCACACGTCGTGCTCCTGGATGGGGAA 45350 >seq4378 Length=48165 Score = 158 bits (174), Expect = 2e-33 Identities = 438/664 (66%), Gaps = 16/664 (2%) Strand=Plus/Plus Query 224981 CGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAAGCA 225040 |||||||| ||||| ||||| ||| ||| ||||| | ||||| || |||||||| Sbjct 14364 CGCCACTGAATGTAGGCGTTGGCAGTCTCGTCGAGGTGCTCTTCAATGTGATGGAAAGCG 14423 Query 225041 TGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCGAGTCGGT 225100 ||||| || ||||| || | |||||| || |||||||| || | || || ||| Sbjct 14424 TGCTGAGCGACGTAAGCGAAACGCATGGAAGGGTGCTTCCATACCGTACCGACGGTGGGT 14483 Query 225101 TGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCAATC 225160 | |||| || || || | |||||| ||||| | ||| || ||||| |||||||||| | Sbjct 14484 TCAACCTCACCCGTCAGCATCTTGATCAGCGTCGACTTACCGGCACCGTTGGGGCCAAGC 14543 Query 225161 ACGCCAATCCGGGATGACATTGCA-ACCTG--CGAGTTCACGTTGCT-GAAGATCT--CA 225214 ||| |||| || ||||||| || || | ||| | |||| | || | | | || Sbjct 14544 ACGGCAATACGCGATGACAGAGCGCACGTCACCGAAATGTTGTTGATCGACGGTTTGTCA 14603 Query 225215 GGGCCAGTTTGGTAAGCAAAGGCCACGCCACGCAGCTTCATGATGGCACGGTCCTTGGAA 225274 |||||| |||| ||| | ||| ||||||| ||||| Sbjct 14604 CGGCCAG---GGTACTGGTAGGTACAGTTGGTCAGACGAATGATGGGCTTACCCTTGTTC 14660 Query 225275 GTAATACCCTCCAGGAACCCGGGCTCGGGGAACTCCCACTTGGTCACCGCGTCCTTCAGG 225334 | || | | ||||| || ||||| |||||| | || || ||| ||| Sbjct 14661 TTGATGTCAGCAAGGAAACCAGGCTCCGGGAACGTGAATCTGAAGGTAGCAGCCTCCAGC 14720 Query 225335 TCGTAGTAAGATGCAGCCTCGGG--TCGCTTTGCCACGAAAGCAGACAGGTTTCCGAGGT 225392 |||||||| | ||||| || || | | ||||||| || ||||| || || Sbjct 14721 TCGTAGTAGGCCTTGGCCTCAGGCTTCACCT--CCACGAACTTGGAAAGGTTGCCCTTGT 14778 Query 225393 GCTTCGTGAGCTTGAGGTTCTTCTCGTAATGAACAATTGCCGAGCACACTGCGTCAAGGA 225452 || | ||||| || ||| |||| |||| || | || || | |||||||| Sbjct 14779 AGATCTTCAGCTTACGGGTCT---CGTAGTGAATGATGTTAGTACAGACCGTGTCAAGGA 14835 Query 225453 AGCCAGAGTCGTGGGACACAATGATGGACGACACGTTCGTCAGGCCCTTGAGGTGCGTGA 225512 ||| |||||||||||||| |||||| || |||||||| |||| | | |||| | Sbjct 14836 AGCTGGAGTCGTGGGACACCATGATGCTCGTCACGTTCGGCAGGTTCGTCAGGTAGTTCT 14895 Query 225513 TGAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAGCAGGATGT 225572 |||||| || ||||| |||| |||| |||||| || || || || |||||||| |||| Sbjct 14896 CGAGCCACGCAACGTTCTTGACATCCAAGTGGTTCGTCGGCTCATCAAGAAGCAGAATGT 14955 Query 225573 CAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCCGGACAGGG 225632 | || | || || || || | || ||| ||||| ||||| || || || |||| Sbjct 14956 CGGCCTTCTGAAGCATAGCACGGGCCAGCTCCAGTTTCATCTTCCAACCACCCGAAAGGG 15015 Query 225633 AGCC 225636 ||| Sbjct 15016 TGCC 15019 Score = 113 bits (124), Expect = 8e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 224449 GTGAGAAATAACTACTACACCGCCGCCGAATGACTCAAGGGCGGATGAAAGCGCGCCAAG 224508 ||||| ||| | || ||||| ||| ||| || | || | | ||| || ||||| Sbjct 13820 GTGAGTAATCATAACGACACCACCGTTGAACTCCTTGATAGCCGTAGCAAGGGCACCAAG 13879 Query 224509 CGACTCGCGGTCAAGGAAGTTCGTCGGCTCATCCAGGATGATAACGTGGGGGCACTGCCA 224568 || |||||||||||| ||||||| |||||||| || | | | ||| ||| | |||| Sbjct 13880 AGAGTCGCGGTCAAGGTAGTTCGTGGGCTCATCAAGCACCAGGATGTGCGGGTTCAGCCA 13939 Query 224569 CAGGGCTGCACCAACCACCAGCTTCACCTTCTGACCGCCAGAGAGGCCGCGGATCCGCGA 224628 || ||| ||||| | ||| | ||||||||||||||| || || || || || || ||||| Sbjct 13940 CATGGCAGCACCCAGCACGACCTTCACCTTCTGACCACCGGACAGACCACGCATGCGCGA 13999 Query 224629 GTGAGTCGTGAATTCGG 224645 ||| || ||| |||| Sbjct 14000 GTGCGTACCGAACTCGG 14016 >seq4807 Length=216255 Score = 127 bits (140), Expect = 4e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 68232 TTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCG 68291 || || || || ||||| | |||| ||| || || ||||| || |||||||| || ||| Sbjct 309 TTACCGCCACGCAGGCGAAGCACCAGGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCG 250 Query 68292 GAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGT 68351 || || | || || || | |||||| |||||||| || || | || ||||| || Sbjct 249 CTCAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGC 190 Query 68352 GGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCT 68411 || ||||||||||||||||| || || ||| || ||||| | ||| | | || Sbjct 189 GGGATGCCTTCCTTGTCTTGGATTTTCTGCTTCACATTGTCGATCGAGTCCGAAGGCTCC 130 Query 68412 ACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || | |||||||| || ||||| || ||||| ||||| |||||||| Sbjct 129 ACGTCGAGCGTGATGGTCTTGCCCGTCAGTGTCTTCACGAAGATCTGCAT 80 >seq2373 Length=111235 Score = 122 bits (134), Expect = 2e-22 Identities = 276/406 (68%), Gaps = 12/406 (3%) Strand=Plus/Minus Query 268394 CCACGTAGAGGGCTCTCGTGGTTGAAGAGGATGCCGTTGCAC-GCGAACATGCCATATGC 268452 ||||| | || |||||||||||||| ||||| ||||| ||| |||||||| || || || Sbjct 7264 CCACGCCGTGGACTCTCGTGGTTGAACAGGATTCCGTT-CACAGCGAACATTCCGTAAGC 7206 Query 268453 CTCACGGTAGTTCACGACCGTCCAGTATGCAAACATCTTTGCAACTGCGTACGGAGAACG 268512 || |||| || || || |||| | ||||| ||| |||| | | ||||| || || Sbjct 7205 TTCGCGGTGATTTACCACACTCCAAAAGGCAAATTGCTTCGCAATTCCATACGGCGAGCG 7146 Query 268513 TGGATGGAAGGGCG--TCGTGATCTTTTGAGGGATTTCTCGGACTTTGCCAAAGAGCTCG 268570 ||| ||||| || | || | ||| || || | |||| || || || | | || Sbjct 7145 TGGGTGGAATGGTGTATCTTCATC--CTGCGGCGTGGCTCGTACCTTCCCGTACAATTCA 7088 Query 268571 GAGGTCGATGCTTGGTAGAACTTTGTTGTTTTTTCGAGACCGCAGATTCGGATTGCCTCG 268630 || || || ||||||||| | || || ||| || ||||| | || | | |||| Sbjct 7087 CTTGTGGAGGCCTGGTAGAACCTAGTGGTACGTTCAAGTCCGCAAGTGCG--TAGACTCG 7030 Query 268631 --AGCAAACGAAGAGTTCCCATGCCATCCACGTCCGCTGTATACTCCGGCATCTCGAATG 268688 |||| || | |||| | ||||| || || || ||||| | || || || | Sbjct 7029 TAAGCAGCCGCAACACACCCAAAGCGTCCACATCGGCCGTGTACTCGGCCAGTTCAAAAG 6970 Query 268689 ACACCTGGACATGGCTCTGGGCGCCCAGGTTATAAACCTCATCCGGTTTGACCTGCTGCA 268748 |||| | |||||| | || |||||||| || |||||||||||| || | | || Sbjct 6969 ACACTTTCACATGGGACATTGCACCCAGGTTGTACACCTCATCCGGTCGCACTTTCGCCA 6910 Query 268749 CGATCT-TCACGAGGTTCGTTGAGTCGGTGAGGTCTCCGTAGTGCA 268793 | |||| ||| | || | | |||||||||||||| ||||||| Sbjct 6909 CAATCTGGCAC-ATATTGGACGCATCGGTGAGGTCTCCATAGTGCA 6865 >seq4141 Length=55182 Score = 114 bits (126), Expect = 2e-20 Identities = 99/123 (80%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 224501 GCGCCAAGCGACTCGCGGTCAAGGAAGTTCGTCGGCTCATCCAGGATGATAACGTGGGGG 224560 ||||| |||| ||||||| ||| | ||||||||||||||||| | | | ||| ||| Sbjct 34335 GCGCCCAGCGCAGCGCGGTCCAGGTAATTCGTCGGCTCATCCAGCACCAGCAAGTGCGGG 34394 Query 224561 CACTGCCACAGGGCTGCACCAACCACCAGCTTCACCTTCTGACCGCCAGAGAGGCCGCGG 224620 || | ||||| ||| ||| ||| ||| ||||||||||||||||| || ||||| |||||| Sbjct 34395 CAGTTCCACATGGCAGCAGCAATCACAAGCTTCACCTTCTGACCACCCGAGAGACCGCGG 34454 Query 224621 ATC 224623 ||| Sbjct 34455 ATC 34457 >seq3030 Length=322 Score = 95.1 bits (104), Expect = 2e-14 Identities = 60/65 (92%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||| |||||||||||| |||||||||| ||||||| ||||||||||||||||||||| Sbjct 320 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCGAGC 261 Query 84516 CCCAC 84520 ||||| Sbjct 260 CCCAC 256 >seq2734 Length=2803 Score = 95.1 bits (104), Expect = 2e-14 Identities = 60/65 (92%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||| |||||||||||| |||||||||| ||||||| ||||||||||||||||||||| Sbjct 2473 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCGAGC 2414 Query 84516 CCCAC 84520 ||||| Sbjct 2413 CCCAC 2409 >seq261 Length=258 Score = 95.1 bits (104), Expect = 2e-14 Identities = 60/65 (92%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||| |||||||||||| |||||||||| ||||||| ||||||||||||||||||||| Sbjct 73 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCGAGC 14 Query 84516 CCCAC 84520 ||||| Sbjct 13 CCCAC 9 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921564499072720