Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F000448265.2_202016-06- 02] 5,026 sequences; 39,481,229 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq4378 136 9e-27 seq4314 111 3e-19 >seq4378 Length=48165 Score = 136 bits (150), Expect = 9e-27 Identities = 417/633 (66%), Gaps = 25/633 (4%) Strand=Plus/Plus Query 333725 CTTCACGAACTCGGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCGTAATG 333784 || |||||||| ||| || || |||||||| |||||||||| || | ||||| || Sbjct 14750 CTCCACGAACTTGGAAAGGTTGCCCTTGTAGATCTTCAGCTTACGGGTC---TCGTAGTG 14806 Query 333785 GATAATAGAGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATCACGCACGA 333844 || || || || || | ||| ||||| | ||||||||| ||||| || | || || Sbjct 14807 AATGATGTTAGTACAGACCGTGTCAAGGAAGCTGGAGTCGTGGGACACCATGATGCTCGT 14866 Query 333845 AACGTCCTTAAGGTTGATCAGGTA-TTCAATC-AGCCACCTCACGTTAGACACAGAAAGA 333902 |||| | ||||| ||||||| ||| || |||||| ||||| ||| | Sbjct 14867 CACGTTCGGCAGGTTCGTCAGGTAGTTC--TCGAGCCACGCAACGTTCTTGACATCCAAG 14924 Query 333903 TGGTTGGTCGGCTCGTCAAGAAGTAGTAGCTTTGCGTTCAGGAGCATTGCACGTGCAAGA 333962 ||||| |||||||| |||||||| || | | || ||| | ||||| ||||| || || Sbjct 14925 TGGTTCGTCGGCTCATCAAGAAGCAGAATGTCGGCCTTCTGAAGCATAGCACGGGCCAGC 14984 Query 333963 GCGAGTTTCATTTTCCACCCTCCTGAAAGAGTGTTAATTG---GGGCAGATTGGCGCTCA 334019 | |||||||| ||||| || || ||||| ||| | | |||| ||| |||| Sbjct 14985 TCCAGTTTCATCTTCCAACCACCCGAAAGGGTGCCCACAGCCTGGGC---TTGCATCTCA 15041 Query 334020 ATATCAAAGCCAAC--CGATTCTAGAGTAGTTACGATCTTTTCACGAGACCAAATGTTTT 334077 ||| | || || | || || |||| || | |||| | ||| Sbjct 15042 GCGGTGAAGTCCACGCCGGTA--AGCGTGTCAACGACCTCCTGGCGAGG---AGTGT--- 15093 Query 334078 CCTTTACTTGTTCATCATTGGCAATGAAGTCAATGATAGCCATGTTAGAATCGGACCCGT 334137 |||| | | |||||| |||||||| | | | || | | || || | | Sbjct 15094 CCTTCAGGTCCTCATCAAACAGGATGAAGTCCACAACGGACAGCTCGGCCTCCGAAGCTT 15153 Query 334138 CGAGATCGTGTTCCACGTAAGCAGTTTTCAAAACATC-CGCAGAGGGGAACCCTTCAAGC 334196 | | ||| || ||| | |||| |||| | || ||| || ||||| || |||||| Sbjct 15154 GCAAGTTGTGCTCGACGAACACAGTCTTCAGCTCGTCGCGC-GACGGGAAGCCGTCAAGC 15212 Query 334197 TGACCGTTCACAATAGCGCGCATCAGAGTTGATTTACCCGCCCCGTTTGGCCCACACAGA 334256 || ||||| ||| |||||||| || || || ||||| ||||| || || |||||| Sbjct 15213 TGGCCGTTGGAAATGGCGCGCATAAGCGTAGACTTACCGCAACCGTTGGGACCGCACAGA 15272 Query 334257 CCGTAGCGGTTTCCACGCTTCAGATTGAACCGCGTATTGTTCAGAAGAATTTTTCCACCA 334316 ||||| |||| |||||||| || | || | |||||||| ||||| | ||||| Sbjct 15273 CCGTAACGGTGGCCACGCTTTAGGCGAAGACGGGCGTTGTTCAGCAGAATCATACCACCG 15332 Query 334317 TATGCCAGAGAAAATTCACAATCACACAGATCC 334349 || || || || || ||||| | || || ||| Sbjct 15333 TAAGCGAGCGAGAACTCACAGTTGCAAAGGTCC 15365 >seq4314 Length=236279 Score = 111 bits (122), Expect = 3e-19 Identities = 257/382 (67%), Gaps = 4/382 (1%) Strand=Plus/Plus Query 243346 TTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAAC 243405 || ||| ||||||| ||||| ||| ||| | |||||||| || | | || ||| Sbjct 45821 TTTTGCTCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCTGGTCTGAGCTTCTCCAAC 45880 Query 243406 GAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTCAAAG 243465 ||| |||| ||||| || || || | ||| | | || | | || |||| || ||| Sbjct 45881 GAGCTCATTAGTCGTGATGAAGGTATGCACACAGACTTTGCTTGTCTGTTGTACTCGAAG 45940 Query 243466 CTCCAGAACAAGCTACCATTCGAAACG-GTCAAACAAATCATCACAGAAGCAGTTGAAAA 243524 || || |||||| || | | || || | | || ||| || || || | | Sbjct 45941 CTGGTGACCAAGCTGCCGGA-GCAGCGTGTGCACGAGATTATCCGTGACGCTGTGAAGAT 45999 Query 243525 CGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAACT 243584 |||| | || || | ||||| | | ||| ||| || ||||||||||| | || Sbjct 46000 CGAACACGAGTTTGTGAGCGACTCGCTCCCAGTGGAGCTGATCGGCATGAACTCGGCGCT 46059 Query 243585 CATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAA 243644 |||| | |||||||| || ||||| || |||||| | | |||||||| || | Sbjct 46060 CATGTGCCAGTACATTGAGTTCGTGGCAGACCGCCTGCTGTATTCGCTTGGTG-TGTCCA 46118 Query 243645 AG-TGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAA 243703 || | |||||| ||||||||| |||| || ||||| | || || || || || || | Sbjct 46119 AGATCTACAACGTCAAGAACCCGTTTGACTGGATGGACATGATCTCTCTACAGGGCAAGA 46178 Query 243704 CTAACTTCTTCGAAAAGCGTGT 243725 ||||||||||||| |||||||| Sbjct 46179 CTAACTTCTTCGAGAAGCGTGT 46200 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102808979353100