Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F000448265.2_202016-06- 02] 5,026 sequences; 39,481,229 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq3693 122 9e-23 seq4807 109 6e-19 seq2815 89.7 6e-13 >seq3693 Length=10515 Score = 122 bits (134), Expect = 9e-23 Identities = 143/191 (75%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 42019 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 42078 |||| || || ||||| || | || || || |||| || |||||||| || ||||| | Sbjct 8307 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 8248 Query 42079 TGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG 42138 | || ||||||||||| | || | | |||||||||| |||||| || |||| | | | Sbjct 8247 TCAGACGCTGCTGGTCAGGCGGAATTCCCTCCTTGTCCTGGATTTTCTGCTTGA-CATTG 8189 Query 42139 CCACCG-TGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 42197 || | |||| || ||||| |||| ||||||||| |||||||| || ||||| ||| Sbjct 8188 TCAATGCTGTCCGACGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACA 8129 Query 42198 AAGATTTGCAT 42208 ||||| ||||| Sbjct 8128 AAGATCTGCAT 8118 >seq4807 Length=216255 Score = 109 bits (120), Expect = 6e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 41999 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 42058 ||||| || | ||| |||||| || || ||||| || ||| || || |||| || Sbjct 289 CACCAGGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCCTC 230 Query 42059 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCAT 42118 |||||||| || ||||| || || ||||||||||| | || | || |||||||| Sbjct 229 CAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCTTG 170 Query 42119 GATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 42178 |||||| || || | | | | || ||| | ||||| |||| ||||||||| || Sbjct 169 GATTTTCTGCTTCACATTGTCGATCGAGTCCGAAGGCTCCACGTCGAGCGTGATGGTCTT 110 Query 42179 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 |||||| || ||||| || ||||| ||||| Sbjct 109 GCCCGTCAGTGTCTTCACGAAGATCTGCAT 80 >seq2815 Length=67856 Score = 89.7 bits (98), Expect = 6e-13 Identities = 81/102 (79%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||||| ||||| || | ||||||||||| || || ||||| || | |||||| || | Sbjct 8778 ACGCAGCACCAGGTGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCCGACAGAGTGCGGCC 8837 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTC 42094 ||| || |||||||| |||||||| || || ||||||||||| Sbjct 8838 GTCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTC 8879 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543178672655840