Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F000448265.2_202016-06- 02] 5,026 sequences; 39,481,229 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq4688 307 1e-78 >seq4688 Length=42416 Score = 307 bits (340), Expect = 1e-78 Identities = 1085/1689 (64%), Gaps = 39/1689 (2%) Strand=Plus/Minus Query 93892 GCCACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTG 93951 |||||||| || |||||||| || || ||||| ||||| |||||||||| ||| || Sbjct 41175 GCCACCCCCACGCTGTTCAATGCTGGTACCCCACGTCCACAATTGTCTTCGTGCTTCTTG 41116 Query 93952 ATGACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACC 94011 || | | ||| ||||| || || |||| |||| || || | |||||| | Sbjct 41115 TTGGCCATGCAGGATGACTCTATTGAAGGCATTTATGACACTCTGAAACAGTGTGCGTGC 41056 Query 94012 ATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCC 94071 ||||| || | || || || || || |||||| | ||| || | || || | | Sbjct 41055 ATCTCCAAGTGGGCAGGAGGCATTGGCATCAGTATGCACAACATCCGAGCTACTAACAGC 40996 Query 94072 TACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAAC 94131 ||||||||||| || || ||| | ||||||||| || |||| ||||| || || || ||| Sbjct 40995 TACATCCGCGGCACGAACGGCTCGTCCAACGGCATCATCCCCATGCTGCGAGTGTTTAAC 40936 Query 94132 AACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTAT 94191 | |||| || ||||||||||||||||| || | | ||||| || || ||| | ||| Sbjct 40935 GATACGGCACGTTACGTGGACCAGGGTGGAGGTAAACGCAAGGGATCATTTGCGATTTAT 40876 Query 94192 CTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAAC 94251 || || || |||||||| || ||| | ||| | || ||||| |||||||| || ||| Sbjct 40875 CTGGAACCGTGGCACGCTGATGTGTTTGAGTTCTTGGATCTGCGCAAGAACCATGGTAAC 40816 Query 94252 GATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAA 94311 || ||| | | || | ||| | ||||| ||||| |||||||| || || || ||||| Sbjct 40815 GAGCTGCACCGTGCACGTGACTTGTTCTATGCTCTGTGGGTGCCGGATCTATTCATGAAG 40756 Query 94312 CGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCC 94371 || || ||| || | |||||| | || |||||||| || |||||| |||| | Sbjct 40755 CGTGTGGAGGCCAATGGCAAGTGGAGTTTGTTCTGTCCCAACGAGGCTCCCGGTCTGTAC 40696 Query 94372 GACGTTTGTGGATCGCGTTTTGAAGAC-TTGTATGCTCGTTACGAATCGCAGGGCAAGGC 94430 || || ||| | | || |||| ||| || ||||| | ||| || Sbjct 40695 GAGTGCTGGGGAGAG-GAGTTCGAGACGCTGTTTGAGAAGTACGAGCGTGAAGGCCGCGC 40637 Query 94431 CAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGAC 94490 | | ||| || ||||| |||||||| || |||||| ||| | ||||| Sbjct 40636 CCGCAAGACAATCAATGCTCAACAGCTGTGGTTCGCTATTCTGGACGCGCAGATTGAGAC 40577 Query 94491 GGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACCT 94550 ||| ||| | ||| || | ||||||| | | |||| |||||| || |||||| |||| Sbjct 40576 GGGCGTGCCTTTCATGTTATACAAGGACGCCGCCAACCGCAAGTCTAATCAGCAGAACCT 40517 Query 94551 CGGGGTGAT---CAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGA 94607 ||| ||| | |||| || ||||| || | | |||||||| || || || Sbjct 40516 CGGCACGATTCGCTCGAGC---AACTTGTGCTGTGAAGTGATGGAGTATACGTCGCCTGA 40460 Query 94608 CGAGATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGAGATGCCTA 94667 ||| | || ||||| ||| ||| ||| | || ||| ||||| |||| | Sbjct 40459 TGAGGTGGCCGTGTGCAACTTGGCGTCCGTGGCGCTCCCCAAGTTCGT-TGAGAACGC-- 40403 Query 94668 CACGTCTACTGCTTCGTTCGATCTGGAGGAGCT-TGTGAACTTCGCGGGAAGGATGGTC- 94725 ||| | | || | || |||| | ||| | || |||| || || Sbjct 40402 --CGTATTCAACTAC----------AAGAAGCTGTATGA---TGTCGTCAAGG-TGATCA 40359 Query 94726 --TTGAACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACT 94783 |||||||||| ||| |||||| |||| ||||||||| ||||| || | Sbjct 40358 CACGCAACCTGAACAAGGTCATCGACGTCAACTACTACCCCGTTATTGAGGCTCGCAATT 40299 Query 94784 CAAACCTGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGA 94843 | ||| || || || || | || || || || ||||| | |||||||| | | Sbjct 40298 CCAACATGCGTCACCGTCCTGTTGGTATTGGTGTGCAGGGCCTTGCGGACGCTTTCATCC 40239 Query 94844 TGATGCGTCTGCCCTACGACTCTGTCGACGCGGCGGGTTTGAATTTGAACATATTCGAAA 94903 | ||| | | | ||| | || ||| | | || ||| || ||||| | Sbjct 40238 TCATGGACTTTGCGTTCGAGAGTCCGGAGGCGCGTGAGCTCAACAAGAATATCTTCGAGA 40179 Query 94904 GCATTTATTACGGGGCCATGAAACAATCCGTCCACTTGGCCAGATCGGACGGCGGGCCAC 94963 ||| || |||| | ||| | || | | |||||| |||| || || Sbjct 40178 CCATCTACTACGCTTCTATGGAGACGTCAATGGAACTGGCCA---CGGAATTGGGCCCGT 40122 Query 94964 ACGAATCGTTCCGCGGATCGCCCTTGGAAC-AGGGCATTTTTCAGTTCGACCTCTGGGGT 95022 |||| | |||| || ||| ||| | | |||| || || |||||||| | ||| Sbjct 40121 ACGAGACTTTCCAGGGTTCG-CCTGCCAGCAAGGGTATCTTCCAGTTCGATATGTGGAAC 40063 Query 95023 GTGAAGC---CCTCGGGTCTGTACGACTGGGAAGCTCTACGCGCTGATGTTATCAAACAC 95079 || | || |||| ||||||| ||||||| || || | | || |||| || Sbjct 40062 GTCACGCCTTCCTCCGGTCTGTGGGACTGGGCTGCGCTTAAGGAGAAGGTGGTCAAGAAC 40003 Query 95080 GGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTT 95139 || || || |||| || || || || ||||| ||||| || ||||| |||||||| Sbjct 40002 GGCCTGCGCAATTCGCTCCTGGTCGCGCCGATGCCGACGGCGTCTACGGCACAGATCCTC 39943 Query 95140 GGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCC 95199 || || |||||||| ||||||| |||||||| ||| |||||||| | || ||||| || Sbjct 39942 GGTAATAACGAGTCTATCGAACCGTTCACCTCTAACATGTACAACCGCCGCGTGCTTGCG 39883 Query 95200 GGGGAATTCCCCGTCATCAACAAGCACCTCCTACGGGACCTGACGTCTCTGGGTGTGTGG 95259 || || || || || | |||||| |||| | || |||| |||||||||||| Sbjct 39882 GGAGAGTTTACCATCGTGAACAAGTACCTGATGAATGAGCTGATTGAGCTGGGTGTGTGG 39823 Query 95260 GGTGACAAGGTCAAGAACCAACTGCTACGCGCCAACGGCTCCGTCCAGAACATCCCGCAA 95319 | | |||| ||||| | | | | ||| || || ||||| | Sbjct 39822 GCTCCTGAGGTGCGTAACCAGATCTTGAATGACGGCGGTTCGGTGCAGAATGTGAGCTCC 39763 Query 95320 ATACCGGAGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAGCGCGTGATA 95379 || ||||| ||||||||| | |||||||| |||||||||||| |||| ||| Sbjct 39762 ATTCCGGACCACATCAAGGAGAAGTACAAGACGGTGTGGGAGATCAAGCAGAAGTCGATT 39703 Query 95380 CTCGACCACGCGGCCGCCCGCGGGCCCTTCATCTGCCAGAGNNNNNNNNNNNNNNNNNNN 95439 || |||| | || | || || ||| |||||| ||||| Sbjct 39702 CTGGACCTGTCTGCGGATCGTGGTGCCTACATCTGTCAGAGTCAGTCGCTGAACATTCAC 39643 Query 95440 ATGGCCGAGCCCAGTCGCGGAAAAATAACGTCCATGTTGTTCTACGGGTGGAGAAAGGGT 95499 || ||||| || | | || | || || ||| || |||| ||||| ||||| Sbjct 39642 ATCGCCGAACCGACAAAAAGCAAGCTTACATCGATGCACTTTTACGCGTGGAAGAAGGGG 39583 Query 95500 CTCAAGACCGGTATGTATTATTTGCGAACCAGGCCAAAGGCGGACTCCATACAGTTCGCC 95559 |||||||| || ||||| || |||| | || || || ||| |||| |||||| || Sbjct 39582 CTCAAGACGGGCATGTACTACATGCGCGGACGCCCGAAAGCTGACGCCATCCAGTTCACC 39523 Query 95560 CTAGAAAAG 95568 | || ||| Sbjct 39522 GTGGACAAG 39514 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494692119014960