Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F000448265.2_202016-06- 02] 5,026 sequences; 39,481,229 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq4314 120 3e-22 seq4807 116 4e-21 seq3693 107 2e-18 seq4688 93.3 4e-14 >seq4314 Length=236279 Score = 120 bits (132), Expect = 3e-22 Identities = 282/423 (67%), Gaps = 11/423 (3%) Strand=Plus/Plus Query 52419 GTCGAGGGCGTGtttttttCCGGCAGCTTTGCCGCCATCTTTTACATTAAAACGAAAGGC 52478 || ||||| | || || || ||| |||| | ||||||| | | || | | || Sbjct 45794 GTGGAGGGAATCTTCTTCTCGGGCTCCTTTTGCTCCATCTTCTGGCTCAAGAAGCGTGGT 45853 Query 52479 ATAATGCCCGGCCTGACGTTCAGCAACGAGTTGATATCGCGCGACGAAGGACTGCACACG 52538 | ||||| || |||| ||| ||||||| | || || || ||||| ||||||| Sbjct 45854 CTCATGCCTGGTCTGAGCTTCTCCAACGAGCTCATTAGTCGTGATGAAGGTATGCACACA 45913 Query 52539 GACTTTGCGTGCCTCTACTACAAGACGCGCGTGACCGAAAAATTGGATTCGGA----CAC 52594 |||||||| || || | ||| || || |||||| || || |||| | Sbjct 45914 GACTTTGCTTGTCTGTTGTACTCGAAGCTGGTGACC---AAGCTGC---CGGAGCAGCGT 45967 Query 52595 GATCCTGAGCATGTTCAAGGAGGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCT 52654 | | ||| || || || || ||| |||||| | |||||| | | | | |||| Sbjct 45968 GTGCACGAG-ATTATCCGTGACGCTGTGAAGATCGAACACGAGTTTGTGAGCGACTCGCT 46026 Query 52655 GCCGGTCGAGCTGCTGGGCATGAACGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGC 52714 || || |||||| | ||||||||| || | ||||||| ||||||| ||||| ||||| Sbjct 46027 CCCAGTGGAGCTGATCGGCATGAACTCGGCGCTCATGTGCCAGTACATTGAGTTCGTGGC 46086 Query 52715 GGATCGTCTGTTGGTGCAGCTCGGGCAGCCAAAGTACTTCAACGCTCGCAATCCGTTTGA 52774 || || ||| || ||| || | | ||| || ||||| || |||||||| Sbjct 46087 AGACCGCCTGCTGTATTCGCTTGGTGTGTCCAAGATCTACAACGTCAAGAACCCGTTTGA 46146 Query 52775 GTTTATGAACAACATTTCGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGA 52834 | ||| ||| || || || |||||||||| ||||| ||||||||||| || ||||| Sbjct 46147 CTGGATGGACATGATCTCTCTACAGGGCAAGACTAACTTCTTCGAGAAGCGTGTGGGCGA 46206 Query 52835 GTA 52837 ||| Sbjct 46207 GTA 46209 >seq4807 Length=216255 Score = 116 bits (128), Expect = 4e-21 Identities = 145/196 (74%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||||||| || || |||||| || || || |||| Sbjct 273 GACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCG 214 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 |||| |||||||| ||||| || || || ||||| ||||| |||||| || || | | Sbjct 213 AAGATCAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCTTGGATTTTCTGCTTCACA 154 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 ||| || | | ||| | | |||||| |||| ||| | || || || ||||| || || Sbjct 153 TTG-TCGATCGAGTCCGAAGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTCAGTGTCTT 95 Query 138600 TACAAAAATCTGCATG 138615 || || ||||||||| Sbjct 94 CACGAAGATCTGCATG 79 >seq3693 Length=10515 Score = 107 bits (118), Expect = 2e-18 Identities = 148/204 (73%), Gaps = 5/204 (2%) Strand=Plus/Minus Query 138416 TGTTTGACTC---CTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTT 138472 |||||| ||| ||| || ||||||||||| | || || ||||||||| || | Sbjct 8319 TGTTTGTCTCACCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCT 8260 Query 138473 TACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTT 138532 | |||| |||| |||||||| ||||| || || || || || ||||| |||||| | Sbjct 8259 TGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGAATTCCCTCCTTGTCCTGGATTTTCT 8200 Query 138533 GTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTC 138591 | || | |||| || | | |||| | || |||||| |||| ||| | || || || ||| Sbjct 8199 GCTTGACATTG-TCAATGCTGTCCGACGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTC 8141 Query 138592 AGAGTTTTTACAAAAATCTGCATG 138615 || || || ||||| ||||||||| Sbjct 8140 AGGGTCTTCACAAAGATCTGCATG 8117 >seq4688 Length=42416 Score = 93.3 bits (102), Expect = 4e-14 Identities = 478/750 (64%), Gaps = 23/750 (3%) Strand=Plus/Plus Query 153809 GCGGCCCTCGCTCTCGTATCGCTCGTACAGTCGCTCAAACTCGTCGCCGTAGCAGTCGGC 153868 |||||| || | |||||| ||| |||| ||| ||||| || || |||| ||| Sbjct 40639 GCGGCCTTCACGCTCGTACTTCTCAAACAGCGTCTCGAACTCCTCTCCCCAGCACTCGTA 40698 Query 153869 GAGGCCGGGACACTGATGCGGACACATCAGCGACCACATATCGTCGGCGTTGACGCGTCG 153928 || |||||| || | ||||| | || |||| | | | ||| | || || Sbjct 40699 CAGACCGGGAGCCTCGTTGGGACAGAACAAACTCCACTTGCCATTGGCCTCCACACGCTT 40758 Query 153929 CATGAACAGATCCGGCACCCAGAGCGCGTACATGAGGTCGCGCGCCT--TGCAATCCTCC 153986 |||||| |||||||||||||| || || || | | ||| || || |||| ||| Sbjct 40759 CATGAATAGATCCGGCACCCACAGAGCATAGAACAAGTCACGTGCACGGTGCAG--CTC- 40815 Query 153987 GCGCCCATG----TTGCGTTTCAGATTGA-GCACGCTATAGATGTCGGCGTGCCAGGGTT 154041 | ||||| ||||| ||||| | | || | | | | || |||||||| |||| Sbjct 40816 GTTACCATGGTTCTTGCG---CAGATCCAAGAACTCAA-ACACATCAGCGTGCCACGGTT 40871 Query 154042 CAATGTAGACGGCCAGGGCACCTTTACGCTT---TCCGCCCTGATCGACGTGGCGCACCA 154098 | | || | || | | || || || || ||| ||||| || |||| || || Sbjct 40872 CCAGATAAATCGCAAATGATCCCTTGCGTTTACCTCCACCCTGGTCCACGTAACGTGCCG 40931 Query 154099 TATTGTTGAAGACGCGCACCATGGGTTCCAGGCCGCTTGCGGTGCCGTTGGTCGAATTGA 154158 ||| ||| || || |||| |||||| | |||| | | | |||||| || || Sbjct 40932 TATCGTTAAACACTCGCAGCATGGGGATGATGCCGTTGGACGAGCCGTTCGTGCCGCGGA 40991 Query 154159 TCTTGCTGCCGCGGGCGCGCACTTGATGCACGTTAACGCCAATGCCGCCGCCGTACTTTG 154218 | | |||| || || | | |||| | | ||||||||| || | |||| | Sbjct 40992 TGTAGCTGTTAGTAGCTCGGATGTTGTGCATACTGATGCCAATGCCTCCTGCCCACTTGG 41051 Query 154219 ATATGGCAGCGCAGTCGCCCAGCGTCCTGTAGATGCCGTCGATGCTATCGTCGCGGACGC 154278 | ||| || || | ||| || || ||||| || || || || | | | Sbjct 41052 AGATGCACGCACACTGTTTCAGAGTGTCATAAATGCCTTCAATAGAGTCATCCTGCATGG 41111 Query 154279 CGAGCAAGAAACACGAACACATTTGCGGAATGCGCGTTCCCGCCGAAAAGAGGGTGGGAC 154338 | | |||||| |||||| ||| ||| ||| | || || || || || ||||| Sbjct 41112 CCAACAAGAAGCACGAAGACAATTGTGGACGTGGGGTACCAGCATTGAACAGCGTGGGGG 41171 Query 154339 TCGCGTGCGTAAACAGTTTTTGGCTCATCATGCGGTACGTTTCGA-TGGCGTCTTCGATA 154397 | ||||| || || | |||||| ||| | ||| || || | || || ||| ||| Sbjct 41172 TGGCGTGGGTGAAGAATTTTTGCGACATGAGTTCGTAAGTCTCAAGTGCCGCCTT-GATG 41230 Query 154398 TCATCGCC--GTGAATGCCGAGCGCGACGCGCATGAGCATGTGCTGCGGACGTTCGGCGA 154455 | ||| | ||| ||||| || || |||||||||| ||| ||||| |||||||| | | Sbjct 41231 T--TCGTCTTGTGGATGCCTAGAGCCACGCGCATGATCATCTGCTGGGGACGTTCCACCA 41288 Query 154456 CTCTATTGTCAATCTTCAAGAGATATCCATTTTCGAGGGTTTTGTAACCGAAATACTTGT 154515 || | || | ||||||||||| | || || || || | || ||||| | || Sbjct 41289 CTTTGCCGTGGACACGGAAGAGATATCCCCTCTCCAGTGTCTTAAAGCCAAAATAATCGT 41348 Query 154516 ATTCAAAATCTAGCTCATGAGCGATGGCCG 154545 ||||||| ||| | ||||| ||||||| Sbjct 41349 ATTCAAAGTCTCGGTCATGGATAATGGCCG 41378 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496231222314720