Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F000448265.2_202016-06- 02] 5,026 sequences; 39,481,229 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq4807 129 6e-25 seq3693 107 2e-18 seq4314 84.2 2e-11 >seq4807 Length=216255 Score = 129 bits (142), Expect = 6e-25 Identities = 155/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 126904 CACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTC 126963 ||||| || | |||||||| || || || ||||| |||| || ||||||| || || Sbjct 289 CACCAGGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCCTC 230 Query 126964 TAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGT 127023 ||||| || || ||| |||||| |||||||| || || || ||||| |||||||| Sbjct 229 CAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCTTG 170 Query 127024 GATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTT 127083 |||||||||||| | | |||| | ||||| | ||| || |||| || | || || Sbjct 169 GATTTTCTGCTTCACATTGTCGATCGAGTCCGAAGGCTCCACGTCGAGCGTGATGGTCTT 110 Query 127084 GCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 ||| ||||| || || || || ||||||||| Sbjct 109 GCCCGTCAGTGTCTTCACGAAGATCTGCATG 79 >seq3693 Length=10515 Score = 107 bits (118), Expect = 2e-18 Identities = 137/189 (72%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985 || || || ||||| || | |||||| || || ||||| || || ||| ||||| Sbjct 8305 TTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 8246 Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCG 127045 | |||||||| || || || || |||||||||||| |||||||||||||| | || Sbjct 8245 AGACGCTGCTGGTCAGGCGGAATTCCCTCCTTGTCCTGGATTTTCTGCTTGACATTGTCA 8186 Query 127046 ACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 127105 | | |||||| ||| || |||| || | || ||||| ||||| || || ||||| Sbjct 8185 ATGCTGTCCGACGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAG 8126 Query 127106 ATCTGCATG 127114 ||||||||| Sbjct 8125 ATCTGCATG 8117 >seq4314 Length=236279 Score = 84.2 bits (92), Expect = 2e-11 Identities = 121/168 (72%), Gaps = 2/168 (1%) Strand=Plus/Plus Query 47412 GGAATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTT 47471 || |||||| ||| | | ||| | ||||||| || || || || ||||||||||| | Sbjct 46043 GGCATGAACTCGGCGCTCATGTGCCAGTACATTGAGTTCGTGGCAGACCGCCTGCTGTAT 46102 Query 47472 CAGCTAAA-GTATCCCAAGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACAT 47530 ||| || ||| ||||| ||| || | |||| || || || | ||| ||| || Sbjct 46103 TCGCTTGGTGTGTCC-AAGATCTACAACGTCAAGAACCCGTTTGACTGGATGGACATGAT 46161 Query 47531 TTCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGGCGAATA 47578 || || |||||||||| ||||| ||||||||||| || ||||| || Sbjct 46162 CTCTCTACAGGGCAAGACTAACTTCTTCGAGAAGCGTGTGGGCGAGTA 46209 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475470926662240