Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F000448265.2_202016-06- 02] 5,026 sequences; 39,481,229 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq4314 208 8e-49 seq4807 129 6e-25 seq3693 127 2e-24 seq2815 93.3 4e-14 >seq4314 Length=236279 Score = 208 bits (230), Expect = 8e-49 Identities = 416/610 (68%), Gaps = 6/610 (1%) Strand=Plus/Minus Query 132887 ACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGA 132946 ||| || ||||||||||| |||| || || || | |||||| |||||| || Sbjct 45932 ACAACAGACAAGCAAAGTCTGTGTGCATACCTTCATCACGACTAATGAGCTCGTTGGAGA 45873 Query 132947 AAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCG 133006 | ||| || |||||||| || || || |||||||| || |||| | || ||||| Sbjct 45872 AGCTCAGACCAGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAGCAAAAGGAGCCCG 45813 Query 133007 AAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTT 133066 | ||||||| ||||| || || || || |||| || ||||| | | | || ||| Sbjct 45812 AGAAGAAGATTCCCTCCACAGCTGCAAATGCCAGAAGACGCTCCGGGTATGAGGACACTT 45753 Query 133067 TGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGA 133126 | | || ||| | |||||||| ||||| | | || ||||| || || || | Sbjct 45752 TCGGGTCGCACCATCTTAGCGCCCAACTCGCCTTCTTGGTCACACACGGGATGGTCTCAA 45693 Query 133127 TGGCGTTCAACAAACGGAGTTTCTCTTCCGAGGAACGCACGTAGGTGTCGATGAGGGTCG 133186 | || || || || ||||| | | | | ||| ||||| ||||| || Sbjct 45692 TTGCACGCAGCAGGTGGTCCTTCTCCACAGCGTCCTTGATGTACGTGTCAATGAGCAGCG 45633 Query 133187 AATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCT 133246 | |||| || ||||| | |||||| ||||| ||||| |||||||| ||||| || |||| Sbjct 45632 AGTACACCTCTGAGTGGATGTTCTCAATGGCAATTTGGAAGCCGTAGAAGCAACGAGCCT 45573 Query 133247 CGACCACCTGCACTTCTTGAGCGAAACGCTCGA--CCAGATTTTCGTTGACGATGCCGTC 133304 | |||||| ||||| | || ||| | || |||| || ||||| |||||||| || Sbjct 45572 CAGGCACCTGTACTTCATT-GCTAAA-GTTCATAGCCAGGTTCTCGTTCACGATGCCATC 45515 Query 133305 GCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCG 133364 |||||||| || ||||||| |||||||||||||| || ||||||||||| | | | Sbjct 45514 ACTGGCGGCAAAGAAGGCCAAGACGTGCTTGATGAAGTGACGCTCGTTGTCTGTGAGGTT 45455 Query 133365 CTCCCAGTCGCGCGTGTCCTTGGA-CAGGTCCACCTCCTCGACGGTCCAAAACGACGCCT 133423 ||||||| | | | | || | || ||||| ||| || | ||||| || |||| Sbjct 45454 TCCCCAGTC-CTTGAGGTCGTGTACCAAGTCCAGCTCTTCCGCAGTCCAGAAGCTGGCCT 45396 Query 133424 CGGCTTTTTTGTACATACTCCACATGTCCGAATATTGTATGGGAAAAATCACAAACCGGC 133483 | || || |||||||| ||||| ||| | || ||||| || | ||| || ||| Sbjct 45395 CCGCCTTCTTGTACATCTGCCACACGTCGTGCTCCTGGATGGGGAATAGCACGAAGCGGT 45336 Query 133484 GGGGGTTTTC 133493 |||||||| Sbjct 45335 TCGGGTTTTC 45326 >seq4807 Length=216255 Score = 129 bits (142), Expect = 6e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || |||||||| |||||||| ||||||| ||| | | Sbjct 80 ATGCAGATCTTCGTGAAGACACTGACGGGCAAGACCATCACGCTCGACGTGGAGCCTTCG 139 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACCA 38362 ||| | | | | || | ||||||| ||||| || || || |||||| ||||| Sbjct 140 GACTCGATCGACAATGTGAAGCAGAAAATCCAAGACAAGGAAGGCAT-CCCGCCTGACCA 198 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | ||| ||||| |||||||| |||| ||||| || | ||||||||| Sbjct 199 GCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGCGACTACAA 258 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| ||||| | || || || ||||||| || || | ||||| Sbjct 259 CATCCAGAAGGAGTCTACACTTCACCTGGTGCTTCGCCTGCGTGGCGG 306 >seq3693 Length=10515 Score = 127 bits (140), Expect = 2e-24 Identities = 142/190 (75%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || |||||||| |||||||| ||||||| ||| | | Sbjct 8118 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACGCTCGACGTGGAGCCGTCG 8177 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||||| | | | | || | ||||||| ||||| ||||||||||| | ||||| Sbjct 8178 GACAGCATTGACAATGTCAAGCAGAAAATCCAGGACAAGGAGGGAATTCCGCCTGACCAG 8237 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || || | ||| ||||| ||||| || |||| ||||| ||| ||||||||| Sbjct 8238 CAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCTCGGACTACAAC 8297 Query 38424 ATCCAAAAGG 38433 ||||| |||| Sbjct 8298 ATCCAGAAGG 8307 >seq2815 Length=67856 Score = 93.3 bits (102), Expect = 4e-14 Identities = 100/127 (79%), Gaps = 4/127 (3%) Strand=Plus/Minus Query 38346 GGAATTCCCGCC-GACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCG 38404 ||||| |||||| ||||| ||||| || || | ||| ||||| |||||||| |||| || Sbjct 8891 GGAAT-CCCGCCTGACCAGCAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCG 8833 Query 38405 CACCCTCAACGACTACAACATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCGTTTGA 38463 ||| || |||||||||||||| ||||| ||| ||||| || ||||||||||| || Sbjct 8832 CACTCTGTCGGACTACAACATCCAGAAGGAGAGC-ACGCTCCACCTGGTGCTGCGTCTGC 8774 Query 38464 GAGGCGG 38470 | || || Sbjct 8773 GTGGTGG 8767 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500141376643840