Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F000448265.2_202016-06- 02] 5,026 sequences; 39,481,229 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq4887 104 2e-16 seq3975 87.8 1e-11 seq4962 86.0 5e-11 >seq4887 Length=77980 Score = 104 bits (114), Expect = 2e-16 Identities = 434/675 (64%), Gaps = 20/675 (3%) Strand=Plus/Minus Query 518015 ACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACT 518074 ||||||||||| || || ||||| || |||| | |||| |||| || || | ||| Sbjct 72878 ACAAGACGATTGTCGAAGTCTTCGCCACCCAGATGCGTATCACCTGCAGTGGCCTTCACT 72819 Query 518075 TGGAAAAGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCA 518134 | ||| | ||| || |||| | || |||| || ||| ||| || || |||| || Sbjct 72818 TCGAAGATTCCTTCCTCAATACTCAGCAGAGAGACGTCAAAGGTGCCGCCGCCCAGGTCG 72759 Query 518135 AAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCA 518194 ||||| || ||||| || | | || || || ||||| || || | |||||| Sbjct 72758 AAAATGAGCACATTGTGCTCCC---CACGCTTCTTGTCCAGACCGTATGCGATGGCAGCA 72702 Query 518195 GCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTA 518254 || ||||||||||| ||||| | || || || | ||||| || || ||||| || Sbjct 72701 GCCGTTGGTTCATTGATAATGCGCAGCACGTTCAATCCAGCGATGGCGCCGGCATCCTTC 72642 Query 518255 GTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACT 518314 || || || | || || ||||| ||||| || || || || | || |||| | ||| Sbjct 72641 GTCGCCTGGCGCTGCGAGTCGTTGAAATACGCCGGGACGGTCACGACCGCATTCTTCACT 72582 Query 518315 TCTTTACCAATATAAGCGCTT--GCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAA 518372 | || || |||| ||||| ||| | ||| || | | | ||| || || | Sbjct 72581 TGCTTGCC--GATAAACGCTTCGGCCACCTCACGCATCTTGATCAGCACCATGGACGAGA 72524 Query 518373 TTTGTTCTGG--GGAATATTGCTTGGATTC-ATTTTGATATGATACTTCAAAATATGGTT 518429 | | || || |||| | ||| || || |||| || || | | | || | Sbjct 72523 TCTCCTCCGGTTGGAACGT--CTTCGACTCGCCCTTGAACTG-CACCACCACCTGAGGCT 72467 Query 518430 TATTACC---AACATTAATAACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTT- 518485 |||| | | || | || || || ||||| | ||| ||||| || || ||||| Sbjct 72466 TATTGTCCGGACCACGCACCACCTTGAACGGCCAATGTTTGATATCCGACTG--CACTTC 72409 Query 518486 -TGGTCATTAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATT 518544 ||| || | | ||| || | || || || || || | || ||| | ||| Sbjct 72408 CAAGTCCGAGAACTTGCGACCGATCAGACGCTTGGCGTCGAACACCGTGTTGTGCGCATT 72349 Query 518545 AATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAAC 518604 || || | || | ||||| || ||||| |||||| | || || || || || | ||| Sbjct 72348 CATGGCCACCTGGTTCTTGGCGGCGTCTCCGATCAGACGCTCCGTGTCCGTGAAGGCAAC 72289 Query 518605 ATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTG 518664 || || || ||||| || |||||||| ||||| || || ||||| || | || || Sbjct 72288 GTACGAAGGGGTTGTACGGTTACCTTGGTCATTGGCGATGATTTCCACACGGTCGTTCTG 72229 Query 518665 CCATACACCTACACA 518679 ||| ||||| || || Sbjct 72228 CCACACACCCACGCA 72214 >seq3975 Length=68667 Score = 87.8 bits (96), Expect = 1e-11 Identities = 201/303 (66%), Gaps = 0/303 (0%) Strand=Plus/Minus Query 518027 TCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCA 518086 ||||| || ||||| ||||| | || | || ||||| || | ||| | || Sbjct 62641 TCAAAGTCCTCACCGCCCAAGTGCGTGTCACCGTTGGTAGCAAGCACCTCGAACACACCG 62582 Query 518087 TCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACA 518146 | |||| || || ||| || ||||| ||| || ||||| | ||||| | || ||| Sbjct 62581 CCGTCAATAGCCAGAAGCGTCACATCGAAGGTACCGCCACCAAGGTCAAAGACCAGCACA 62522 Query 518147 TTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCA 518206 ||| | || | | || || |||| ||| || |||| ||||||||||| || || Sbjct 62521 TTCTTCTCGCCCTGTGCCTTCTTGTCAATACCGTAAGCAATGGCAGCAGCAGTAGGCTCG 62462 Query 518207 TTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTT 518266 ||||| || | | ||| | ||||| ||||| | || ||||| || || || || | Sbjct 62461 TTAATGATACGCTGCACAGTCAGACCGGCAATGGTACCGGCATCCTTGGTAGCCTGACGC 62402 Query 518267 TGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATA 518326 || | ||||| || || ||||| || |||| || || ||| ||||| ||||| Sbjct 62401 TGAGCGTCGTTGAAGTAAGCAGGCACTGTAACCACAGCGTCAAACACTTCACGGCCAATG 62342 Query 518327 TAA 518329 ||| Sbjct 62341 TAA 62339 >seq4962 Length=66780 Score = 86.0 bits (94), Expect = 5e-11 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 668855 GGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAACGTGTCGATATGTCTGCACGT 668914 |||||||| ||||||||| | || || | ||||| || ||||||||| | || || ||| Sbjct 62833 GGTAAAGAGGGTCGTATTCGTGGTAACCTAATGGGCAAGCGTGTCGATTTTTCGGCGCGT 62774 Query 668915 ACAGTTATTACTTCTGATCCCAATATTGCTCTCAATGAAGTTGGTGTTCC 668964 || || || || |||| || || |||||| | || ||||||||||||| Sbjct 62773 ACTGTCATCACCGCTGACCCTAACATTGCTATTGATCAAGTTGGTGTTCC 62724 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780572993324356