Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F000448265.2_202016-06- 02] 5,026 sequences; 39,481,229 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq4688 161 1e-34 seq4314 125 9e-24 seq4851 87.8 2e-12 >seq4688 Length=42416 Score = 161 bits (178), Expect = 1e-34 Identities = 1051/1656 (63%), Gaps = 66/1656 (4%) Strand=Plus/Minus Query 111705 TTCATCCACGCAACACCAACCCTCTTCAACGCTGGTACACCAAGACCCCAAATGTCCAGT 111764 |||| |||||| || || || || ||||| |||||||| ||| | || ||| |||| Sbjct 41184 TTCACCCACGCCACCCCCACGCTGTTCAATGCTGGTACCCCACGTCCACAATTGTCTTCG 41125 Query 111765 TGTTTCCTTATTGCAAACAAGGAGGATTCAATCAATGGCATTTACGGCACTCTCACTGAA 111824 || ||| | | || | |||| || || || | |||||||| | |||||| | | Sbjct 41124 TGCTTCTTGTTGGCCATGCAGGATGACTCTATTGAAGGCATTTATGACACTCTGAAACAG 41065 Query 111825 TGTGCCCAAATCTCAAAGTGGGCTGGTGGTATCGGGATGCACATCCATGATGTCAGAGCC 111884 ||||| ||||| |||||||| || || || || || || || | || |||| Sbjct 41064 TGTGCGTGCATCTCCAAGTGGGCAGGAGGCATTGGCATCAGTATGCACAACATCCGAGCT 41005 Query 111885 AACAAGTCTCGTATTAGAGGTACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGC 111944 | || || | || || || || || | || || || || ||||| || Sbjct 41004 ACTAACAGCTACATCCGCGGCACGAACGGCTCGTCCAACGGCATCATCCCCATGCTGCGA 40945 Query 111945 GTATTTAACGCCACAGCGCGCTATGTAAACCAAGCTGGGCGT---CGCAAGGGATCTATC 112001 || ||||||| || || || || || |||| | ||| || ||||||||||| | Sbjct 40944 GTGTTTAACGATACGGCACGTTACGTGGACCAGGGTGGAGGTAAACGCAAGGGATCATTT 40885 Query 112002 GCAGTCTATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAAC 112061 || | ||||| || || |||||||| ||| | | |||||| | || |||| ||| Sbjct 40884 GCGATTTATCTGGAACCGTGGCACGCTGATGTGTTTGAGTTCTTGGATCTGCGCAAGAAC 40825 Query 112062 CAAGGTGATGAGGAGGCGCGGTGC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCT 112120 || ||| | || | || | |||| || || | |||| ||||| ||| | || ||||| Sbjct 40824 CATGGTAACGA-GCTGCACCGTGCACGTGACTTGTTCTATGCTCTGTGGGTGCCGGATCT 40766 Query 112121 CTTCATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACC 112180 ||||||||| | || |||| | |||||| ||| | | || ||||| || |||| || Sbjct 40765 ATTCATGAAGCGTGTGGAGGCCAATGGCAAGTGGAGTTTGTTCTGTCCCAACGAGGCTCC 40706 Query 112181 CGGTCTCTCCGA-TGCCGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAG 112239 |||||| | ||| ||| | ||| |||||||| || | || | ||||||||| | Sbjct 40705 CGGTCTGTACGAGTGCTG-GGGAGAGGAGTTCGAGACGCTGTTTGAGAAGTACGAGCGTG 40647 Query 112240 AAAGTCGGGCGACTGC--GACGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTC 112297 || | | ||| | || ||| | ||| | ||||| |||||||| | | Sbjct 40646 AAGGCC--GCGCCCGCAAGACAATCAATGCTCAACAGCTGTGGTTCGCTATTCTGGACGC 40589 Query 112298 TCAAACCGAGACTGGTACACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAA 112357 || | ||||| || || | ||| | ||||| |||||| |||| ||| ||| Sbjct 40588 GCAGATTGAGACGGGCGTGCCTTTCATGTTATACAAGGACGCCGCCAACCGCAAGTCTAA 40529 Query 112358 TCAAAAGAATTTGGGTGTGAT---CAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATT 112414 ||| |||| | || ||| | ||| |||| | || ||| | |||| | Sbjct 40528 TCAGCAGAACCTCGGCACGATTCGCTCGAG---CAACTTGTGCTGTGAAGTGATGGAGTA 40472 Query 112415 TACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGT 112474 ||| |||||| ||| ||||| ||| | || || | || |||||||||| || Sbjct 40471 TACGTCGCCTGATGAGGTGGCCGTGTGCAACTTGGCGTCCGTGGCGCTCCCCAAGTTCGT 40412 Query 112475 GGATCCAGAGACAAAGACATTTGATTATGAAAAACTCCACGAAGTTACG-AAAACTG-TC 112532 | ||| || | ||| | || | || || | || || || || || || Sbjct 40411 TG----AGA-ACGCCG-TATTCAACTACAAGAAGCTGTATGATGT--CGTCAAGGTGATC 40360 Query 112533 ACAAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCG---TTGAGACTGCTCGT 112589 ||| ||||| |||| || || || || | ||||||| ||||| ||||| Sbjct 40359 ACACGCAACCTGAACAAGGTCATCGACGTCAACTACTACCCCGTTATTGAG---GCTCGC 40303 Query 112590 AAATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTC 112649 || || || ||| | |||||||| ||||| | ||||| || || || ||||| | ||| Sbjct 40302 AATTCCAACATGCGTCACCGTCCTGTTGGTATTGGTGTGCAGGGCCTTGCGGACGCTTTC 40243 Query 112650 AT--TCTTTGTCGCCACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGTATAT 112707 || || | | | || || |||| || ||| || |||| | ||| | Sbjct 40242 ATCCTCATGGACTTTGCGTTCGAGAGTCCG--GAGGCGCGTGAGCTCAACAAGAATATCT 40185 Query 112708 TTGAGACAATGTATCACGCCGCTCTTGAGGCGAGTTCGGAGTTGGCAGAGG--TTGATGG 112765 | ||||| || || |||| || | ||| || ||| |||| || ||| || Sbjct 40184 TCGAGACCATCTACTACGCTTCTATGGAGACGTCAATGGAACTGGCCACGGAATTG--GG 40127 Query 112766 TCCATATGAAACCTTTGAGGGTTCTCCAGCTTCA-CAAGGGGTGCTT-CAATTTGATATG 112823 || || || || || ||||||| || || || |||||| ||| || || |||||| Sbjct 40126 CCCGTACGAGACTTTCCAGGGTTCGCCTGC--CAGCAAGGGTATCTTCCAGTTCGATATG 40069 Query 112824 TGGGAAGGTGAGACCAAGCT----TCACTACGACTGGGACGCTCTCAAGGA-ACG--CAT 112876 | |||| || | || || || | ||||||| || || ||||| | | | Sbjct 40068 T-GGAACGTCACGCCTTCCTCCGGTCTGTGGGACTGGGCTGCGCTTAAGGAGAAGGTGGT 40010 Query 112877 CAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGC 112936 || |||| || || || || || || | || || ||||| || || || || || Sbjct 40009 CA---AGAACGGCCTGCGCAATTCGCTCCTGGTCGCGCCGATGCCGACGGCGTCTACGGC 39953 Query 112937 ACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACACGACGAACATCTATCTGAGAAG 112996 ||| ||| | |||||||| || | | ||||| | ||| | ||||| || | | Sbjct 39952 ACAGATCCTCGGTAATAACGAGTCTATCGAACCGTTCACCTCTAACATGTACAACCGCCG 39893 Query 112997 AACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGCATCTCGTGGATGACCTCAAAGAGAT 113056 || |||||||||||| || || |||||| | || || |||| || | ||| | Sbjct 39892 CGTGCTTGCGGGAGAGTTTACCATCGTGAACAAGTACCTGATGAATGAGCTGATTGAGCT 39833 Query 113057 TGGTCTCTGGTCCAAGGATATGAAGGATCTCATGGTGAAAGCGGGTGGTTCCATTCAAAA 113116 ||| | ||| | || || | | || |||| | || ||||| | || || Sbjct 39832 GGGTGTGTGGGCTCCTGAGGTGCGTAACCAGATCTTGAATGACGGCGGTTCGGTGCAGAA 39773 Query 113117 TATTGTG-GAT--ATTCCAGATGAAATTAAGAAGTTGTACCGCACAGTTTGGGAAATCAA 113173 |||| | | ||||| || | || ||| || |||| || || ||||| ||||| Sbjct 39772 ---TGTGAGCTCCATTCCGGACCACATCAAGGAGAAGTACAAGACGGTGTGGGAGATCAA 39716 Query 113174 GATGAAG--GATGTCATTGACATGGCCGCAGATCGTGGTCGCTTCATTGATCAAAGTCAA 113231 | |||| ||| || | ||| || | || ||||||||| || ||| ||| ||||| Sbjct 39715 GCAGAAGTCGAT-TC-TGGACCTGTCTGCGGATCGTGGTGCCTACATCTGTCAGAGTCAG 39658 Query 113232 AGTATGAATCTATTCATGGAAAGTCCAACGATGTCCAAGCTCTCTTCTATGCACATGTAC 113291 |||| | ||| | || || | |||||| | || |||||| | ||| Sbjct 39657 TCGCTGAACATTCACATCGCCGAACCGACAAAAAGCAAGCTTACATCGATGCACTTTTAC 39598 Query 113292 AGTTGGAAGAAGGGTCTCAAAACGGGGATGTATTAC 113327 ||||||||||| ||||| ||||| ||||| ||| Sbjct 39597 GCGTGGAAGAAGGGGCTCAAGACGGGCATGTACTAC 39562 >seq4314 Length=236279 Score = 125 bits (138), Expect = 9e-24 Identities = 119/152 (78%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 102180 GAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCT 102239 ||||| || | |||||||| ||| ||||| ||||||||||| || ||||| ||| | Sbjct 45770 GAGCGTCTTCTGGCATTTGCAGCTGTGGAGGGAATCTTCTTCTCGGGCTCCTTTTGCTCC 45829 Query 102240 ATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATC 102299 || | |||||||||||||| ||||||||||| ||||| |||||||||||||||| || Sbjct 45830 ATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCTGGTCTGAGCTTCTCCAACGAGCTCATT 45889 Query 102300 TCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331 |||||| || || | ||| ||| ||||| Sbjct 45890 AGTCGTGATGAAGGTATGCACACAGACTTTGC 45921 >seq4851 Length=159302 Score = 87.8 bits (96), Expect = 2e-12 Identities = 260/387 (67%), Gaps = 28/387 (7%) Strand=Plus/Plus Query 176702 GGCCAGAAGTAGTGAATCATATTGAGAATGAGACCCTTGATGTGGGAACCGTCGTTATCG 176761 |||||||||| ||| || | ||||| | |||||||| || || || |||| ||| Sbjct 102242 GGCCAGAAGTGGTGGATGAGATTGATCACCAGACCCTTAATATGACTGCCATCGTGATCT 102301 Query 176762 GCATCCGTCATGATCATGAGACGACCATACCG-AAGC---TCG--GAAACAT-CTTGATA 176814 ||| | ||||||||| || | |||||||| |||| ||| || ||| | | | Sbjct 102302 TGATCTGCCATGATCATCAGGTGGCCATACCGCAAGCCTTTCGTGGACTCATACAT--TT 102359 Query 176815 GTCCTTACCCTGTTGAAGACCCAAGATCTTCTTGAGATCGTT--GAA-CTCTTGGTTTGA 176871 | || ||| |||| |||||| |||||| |||| ||| ||||| |||| Sbjct 102360 GGCCATAC----TTGAGT--CCAAGAA--TCTTGACCACGTTTTGAATCTCTTCGTTTTT 102411 Query 176872 TGTGAGCTGTGTGACAGAGGCATCACGAACATTCTTACA-CTTCCCACGAAGAGGGAAGA 176930 || || | | || ||||| ||||| | || ||| ||||| || || || | Sbjct 102412 CAGGATTTGGGAGTGGCTTGCCTCACGCACATT-TAGCATCTTACCACGCAGCGGAAATA 102470 Query 176931 CACCGTAGTGATCGCGACCAACCACAGAGAGACCCGCAACCGCGAGCGTTTTCGCAGAAT 176990 ||||||||| || | ||||| || | ||||| | || || | ||||| || |||| Sbjct 102471 CACCGTAGTAGTCTCTCCCAACGACGGCAAGACCACCCACAGCTACTGTTTTAGCTGAAT 102530 Query 176991 CACCCTCTGTCACGATGAGTGTACA---CTTGCCAGATTGTGCCGTACCCGCCTTGTTCG 177047 |||||||||| | ||| ||||| || |||||| | || || || || | ||| | Sbjct 102531 CACCCTCTGTAAGGATAAGTGTGCAGTCCTTGCC---CTTCGCAGTGCCGGCGTGGTTGG 102587 Query 177048 CATCATCCAATTTGGGAATACCAGTAA 177074 |||| || | || |||||||| |||| Sbjct 102588 CATCGTCTAGCTTTGGAATACCCGTAA 102614 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620703401858720