Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F000448265.2_202016-06- 02] 5,026 sequences; 39,481,229 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq4894 149 7e-31 seq4851 105 8e-18 seq4314 89.7 6e-13 >seq4894 Length=261303 Score = 149 bits (164), Expect = 7e-31 Identities = 289/418 (69%), Gaps = 13/418 (3%) Strand=Plus/Plus Query 11497 ATCTTACGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTT 11556 |||| |||||||| ||||| || || | | || | || ||||||||| ||||||| Sbjct 195875 ATCTGCCGATCGAATCGACCAGGACGCAAAATGGCCTTGTCTAGAATATCGGCACGGTTC 195934 Query 11557 GTAGCGGCAATGACTACAATGCCAGTCTCATT---GTCGAAACCGTCCATTTCTGTGAGA 11613 ||| |||| | || || | || |||| | || |||||| ||||| || || Sbjct 195935 GTACCGGCGAGCACCACCACACC---CTCACTCGAGTTGAAACCATCCATCTCAACCAGC 195991 Query 11614 AGCTGGTTGATCGTCTGTTCACGCTCATCGTTGGAG--GGCATACC-ACCTGCCGAACGC 11670 |||||||| | || | ||||||||| |||||| | || | | |||| ||| Sbjct 195992 AGCTGGTTCAATGTGTTTTCACGCTCGTCGTTGCCGCCGGAAAAGTTACCTTTGCTACG- 196050 Query 11671 TTCTTAC-CGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGC 11729 | | | | |||||||| || ||||| ||||| || |||||||| ||| || || || Sbjct 196051 TGCACGCGCAACAGCGTCGATTTCATCAATGAACACAATACACGGAGCGTTCGCTCGCGC 196110 Query 11730 CTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTT 11789 || | ||| | ||||| |||||| || || ||||| ||||||||||||| ||| | Sbjct 196111 CTCCTTGAACAAGTCACGCACACGCGACGGACCCACACCGACGAACATCTCAATGAAATC 196170 Query 11790 TGCGGCAGA-ACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGA 11848 || | || | |||||| ||| || || | | ||||||||| | ||| ||| || | Sbjct 196171 TGAACCGGAGATACTGAA-GAATGGCACGCTGGCCTCACCAGCCGTTGCTTTAGCCAGCA 196229 Query 11849 GAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACC 11906 | || ||||| |||||||| | ||| | || || || || ||||||||| || || Sbjct 196230 GCGTTTTACCTGTACCAGGCGGTCCAACAAGCAGCGCACCCTTGGGGATCTTCGCCCC 196287 >seq4851 Length=159302 Score = 105 bits (116), Expect = 8e-18 Identities = 123/165 (75%), Gaps = 6/165 (4%) Strand=Plus/Plus Query 168429 CTTACCACGGAGTGGAAATACCCCATAATGATCTCTACCCACGACGGAGAGACCAGCGAC 168488 ||||||||| || |||||||| || || | ||||| || ||||||| |||||| | || Sbjct 102451 CTTACCACGCAGCGGAAATACACCGTAGTAGTCTCTCCCAACGACGGCAAGACCACCCAC 102510 Query 168489 AGCGAGAGTTTTCGCTGAATCACCCTCTGTCACGATGAGTGTACA---CTTTCCAGACTG 168545 ||| | ||||| ||||||||||||||||| | ||| ||||| || ||| || || Sbjct 102511 AGCTACTGTTTTAGCTGAATCACCCTCTGTAAGGATAAGTGTGCAGTCCTTGCC---CTT 102567 Query 168546 TGCCGTACCAGCTTTGTTCGCATCGTCCAATTTGGGGATACCAGT 168590 || || || || | ||| |||||||| | || || ||||| || Sbjct 102568 CGCAGTGCCGGCGTGGTTGGCATCGTCTAGCTTTGGAATACCCGT 102612 >seq4314 Length=236279 Score = 89.7 bits (98), Expect = 6e-13 Identities = 111/152 (73%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 119496 GCAAATTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCA 119555 ||||| ||| || | |||||||| ||| |||||||| || ||||| || ||| Sbjct 45921 GCAAAGTCTGTGTGCATACCTTCATCACGACTAATGAGCTCGTTGGAGAAGCTCAGACCA 45862 Query 119556 GGCATGAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATG 119615 |||||||| || | ||||| ||||| ||||||| ||||| || || |||||||| Sbjct 45861 GGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAGCAAAAGGAGCCCGAGAAGAAGATT 45802 Query 119616 CCCTCCACACAGGCGAAAGCGAATAGACGCTC 119647 ||||||||| || || || | |||||||| Sbjct 45801 CCCTCCACAGCTGCAAATGCCAGAAGACGCTC 45770 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588938997582800