Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F000448265.2_202016-06- 02] 5,026 sequences; 39,481,229 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq4688 156 5e-33 seq4314 120 4e-22 seq4813 87.8 2e-12 seq3723 87.8 2e-12 seq3050 87.8 2e-12 seq2392 87.8 2e-12 seq1662 87.8 2e-12 seq4851 82.4 9e-11 seq3130 82.4 9e-11 seq3037 82.4 9e-11 seq2341 82.4 9e-11 >seq4688 Length=42416 Score = 156 bits (172), Expect = 5e-33 Identities = 614/954 (64%), Gaps = 19/954 (2%) Strand=Plus/Plus Query 106452 ACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACT 106511 |||| || || || | || ||||| ||||| || ||| |||||| || |||| Sbjct 40416 ACTTGGGGAGCGCCACGGACGCCAAGTTGCACACGGCCACCTCATCAGGCGACGTATACT 40475 Query 106512 CTAAAATTTCTGTACACAAGTTGGAACTCTT---AATCGTCCCCAAATTCTTTTGGTTAC 106568 | | | ||| ||||||||| ||| |||||| || | |||| || ||| Sbjct 40476 CCATCACTTCACAGCACAAGTTG---CTCGAGCGAATCGTGCCGAGGTTCTGCTGATTAG 40532 Query 106569 TCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACT 106628 ||| |||| || |||||||| | |||| | ||| |||||||| |||| | | Sbjct 40533 ACTTGCGGTTGGCGGCGTCCTTGTATAACATGAAAGGCACGCCCGTCTCAATCTGCGCGT 40592 Query 106629 TGAGAATTGCCTTCCACACATCGGCGGC--TGGTACAATGGCGTTGGCCCGTCCCTCCGC 106686 ||||| || ||||| | || || | | ||| ||| || || || Sbjct 40593 CCAGAATAGCGAACCACAGCTGTTGAGCATTGATTGTCTTGCG--GGCGCGGCCTTCACG 40650 Query 106687 CTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCG-TCGGAGAGACCTGGTG 106745 ||||||||| | || | || |||||||| ||| | || ||| | ||||| || | Sbjct 40651 CTCGTACTTCTCAAACAGCGTCTCGAACTCCTCTCCC-CAGCACTCGTACAGACCGGGAG 40709 Query 106746 CCTTGTCTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGT 106805 ||| || |||||||| | | ||| | ||| |||| || ||||||||||| || | Sbjct 40710 CCTCGTTGGGACAGAACAAACTCCACTTGCCATTGGCCTCCACACGCTTCATGAATAGAT 40769 Query 106806 CTGGAATCCACAGGGATGAAAAGAGATCTC-TACACCGAGCCTCTTCGTCACCTTGGTTG 106864 | || | |||||| | | || | || | | ||| | || || ||| ||| ||||| Sbjct 40770 CCGGCACCCACAGAGCATAGAACAAGTCACGTGCACGGTGCAGCT-CGTTACCATGGTTC 40828 Query 106865 AGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATA 106924 || | || | |||||| | | ||| |||||||| || || ||||| | || | Sbjct 40829 TTGCGCAGATCCAAGAACTCAAACACATCAGCGTGCCACGGTTCCAGATAAATCGCAAAT 40888 Query 106925 GATCCCTTTCG---ACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGA 106981 |||||||| || || ||| | || | || || || || || ||||||| || || Sbjct 40889 GATCCCTTGCGTTTACCTCCACCCTGGTCCACGTAACGTGCCGTATCGTTAAACACTCGC 40948 Query 106982 AGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGAT-TTATTGGC 107040 ||||| || || || || | || || || || || || || || | ||| | || Sbjct 40949 AGCATGGGGATGATGCCGTTGGACGAGCCGTTCGTGCCGCGGATGT-AGCTGTTAGTAGC 41007 Query 107041 TCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTC 107100 || | | || || || ||||| || || |||||||| ||||| |||||||| Sbjct 41008 TCGGATGTTGTGCATACTGATGCCAATGCCTCCTGCCCACTTGGAGATGCACGCACACTG 41067 Query 107101 CGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACT 107160 | ||||| |||| || || | || ||||| |||| |||| | | |||||| Sbjct 41068 TTTCAGAGTGTCATAAATGCCTTCAATAGAGTCATCCTGCATGGCCAACAAGAAGCACGA 41127 Query 107161 GGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACAT 107220 |||| || || | ||| |||||||||||||| || || || || ||||| |||| | Sbjct 41128 AGACAATTGTGGACGTGGGGTACCAGCATTGAACAGCGTGGGGGTGGCGTGGGTGAAGAA 41187 Query 107221 ACCTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCC 107280 ||| ||||| ||||| ||||| | | | | |||| | ||||||||| Sbjct 41188 TTTTTGCGACATGAGTTCGTAAGTCTCAAGTGCCGCCTTGATGTTCGTCTTGTGGATGCC 41247 Query 107281 GATGGCCACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTG 107340 | ||||| ||||| | ||| | ||||| ||||| | |||| | || || Sbjct 41248 TAGAGCCACGCGCATGATCATCTGCTGGGGACGTTCCACCACTTTGCCGTGGACACGGAA 41307 Query 107341 AAGATAGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCCG 107394 ||||| | | |||| || || || | ||||| ||| | | ||| |||| || Sbjct 41308 GAGATATCCCCTCTCCAGTGTCTTAAAGCCAAAATAATCGTATTCAAAGTCTCG 41361 >seq4314 Length=236279 Score = 120 bits (132), Expect = 4e-22 Identities = 330/500 (66%), Gaps = 12/500 (2%) Strand=Plus/Minus Query 116986 TAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 117045 || || || || |||||||| |||||||| ||||| || | || || | ||||| Sbjct 46209 TACTCGCCCACACGCTTCTCGAAGAAGTTAGTCTTGCCCTGTAGAGAGATCATGTCCATC 46150 Query 117046 AAGTCAAATGGATTCTTCGCGTTCCAAATGGGTGGCACCCCAACTTGTTTGAGGAGACGA 117105 ||||||| || ||||| |||| | || | ||| |||| | || || || Sbjct 46149 CAGTCAAACGGGTTCTTGACGTTGTAGATCTTGGACACACCAAGCGAATACAGCAGGCGG 46090 Query 117106 TCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGATTACAT 117165 || | ||| |||||||||||| | |||| | | |||||||| ||||| || | | Sbjct 46089 TCTGCCACGAACTCAATGTACTGGCACATGAGCGCCGAGTTCATGCCGATCAGCTCCACT 46030 Query 117166 GGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGTGG 117225 ||||| | ||| | ||| | | || |||| || || || | || |||| Sbjct 46029 GGGAGCGAGTCGCTCACAAACTCGTGTTCGATCTTCACAGCGTCACGGATAATCTCGTGC 45970 Query 117226 ATA----GTTTCGGTAG-TGGGTCTATTACGCAAAGTCTTGAAGAGCTCCACGGCAAACT 117280 | | | | ||| || | |||| || || || | | | | ||||| | Sbjct 45969 ACACGCTGCTCCGGCAGCTTGGTC----AC-CAGCTTCGAGTACAACAGACAAGCAAAGT 45915 Query 117281 CCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGA 117340 | ||| | ||| ||||| || ||| || || || ||||||| || || ||||||| Sbjct 45914 CTGTGTGCATACCTTCATCACGACTAATGAGCTCGTTGGAGAAGCTCAGACCAGGCATGA 45855 Query 117341 GACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCA 117400 |||| |||||||| | ||| | || | ||| || || || ||||||||||| ||||||| Sbjct 45854 GACCACGCTTCTTGAGCCAGAAGATGGAGCAAAAGGAGCCCGAGAAGAAGATTCCCTCCA 45795 Query 117401 CACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTT-GTGTCAAACCATTTC 117459 || ||||| || | ||| ||||| | | | ||| || ||||| | ||| ||||| | Sbjct 45794 CAGCTGCAAATGCCAGAAGACGCTCCGGGTATGAG-GACACTTTCGGGTCGCACCATCTT 45736 Query 117460 ATTGCCCATTTCGCCTTCTT 117479 | ||||| |||||||||| Sbjct 45735 AGCGCCCAACTCGCCTTCTT 45716 >seq4813 Length=865 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 136164 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 136223 |||||||| ||||| |||| | |||| ||||||||||||||| | | || |||||||||| Sbjct 568 GCTCTTATGGTGTAATGGTTAGCACTCTGGACTTTGAATCCAGCGATCCGGGTTCAAATC 509 Query 136224 CAGGTAGGAGCTT 136236 | ||||||||||| Sbjct 508 CCGGTAGGAGCTT 496 >seq3723 Length=666 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 136164 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 136223 |||||||| ||||| |||| | |||| ||||||||||||||| | | || |||||||||| Sbjct 112 GCTCTTATGGTGTAATGGTTAGCACTCTGGACTTTGAATCCAGCGATCCGGGTTCAAATC 171 Query 136224 CAGGTAGGAGCTT 136236 | ||||||||||| Sbjct 172 CCGGTAGGAGCTT 184 >seq3050 Length=640 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 136164 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 136223 |||||||| ||||| |||| | |||| ||||||||||||||| | | || |||||||||| Sbjct 112 GCTCTTATGGTGTAATGGTTAGCACTCTGGACTTTGAATCCAGCGATCCGGGTTCAAATC 171 Query 136224 CAGGTAGGAGCTT 136236 | ||||||||||| Sbjct 172 CCGGTAGGAGCTT 184 >seq2392 Length=7847 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 136164 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 136223 |||||||| ||||| |||| | |||| ||||||||||||||| | | || |||||||||| Sbjct 243 GCTCTTATGGTGTAATGGTTAGCACTCTGGACTTTGAATCCAGCGATCCGGGTTCAAATC 184 Query 136224 CAGGTAGGAGCTT 136236 | ||||||||||| Sbjct 183 CCGGTAGGAGCTT 171 >seq1662 Length=680 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 136164 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 136223 |||||||| ||||| |||| | |||| ||||||||||||||| | | || |||||||||| Sbjct 126 GCTCTTATGGTGTAATGGTTAGCACTCTGGACTTTGAATCCAGCGATCCGGGTTCAAATC 185 Query 136224 CAGGTAGGAGCTT 136236 | ||||||||||| Sbjct 186 CCGGTAGGAGCTT 198 >seq4851 Length=159302 Score = 82.4 bits (90), Expect = 9e-11 Identities = 119/167 (71%), Gaps = 6/167 (4%) Strand=Plus/Plus Query 169361 CTTCCCACGGAGAGGAAAGACGCCATAGTGATCACGTCCAACGACGGAGAGACCCGCGAC 169420 ||| ||||| || ||||| || || |||| || | |||||||||| ||||| | || Sbjct 102451 CTTACCACGCAGCGGAAATACACCGTAGTAGTCTCTCCCAACGACGGCAAGACCACCCAC 102510 Query 169421 CGCAAGGGTTTTCGCTGAATCACCCTCCGTGACAATGAGGGTACA---CTTTCCAGATTG 169477 || | ||||| |||||||||||||| || | || || || || ||| || | Sbjct 102511 AGCTACTGTTTTAGCTGAATCACCCTCTGTAAGGATAAGTGTGCAGTCCTTGCC---CTT 102567 Query 169478 CGCCGTACCCGCCTTGTTTGCGTCGTCCAACTTGGGAATACCAGTAA 169524 ||| || || || | ||| || ||||| | ||| |||||||| |||| Sbjct 102568 CGCAGTGCCGGCGTGGTTGGCATCGTCTAGCTTTGGAATACCCGTAA 102614 >seq3130 Length=254 Score = 82.4 bits (90), Expect = 9e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 136164 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 136223 |||||||| ||||| |||| | |||| ||||||||||||||| | | || |||||||||| Sbjct 12 GCTCTTATGGTGTAATGGTTAGCACTCTGGACTTTGAATCCAGCGATCCGGGTTCAAATC 71 Query 136224 CAGGTAGGAGCTT 136236 | || |||||||| Sbjct 72 CCGGGAGGAGCTT 84 >seq3037 Length=267 Score = 82.4 bits (90), Expect = 9e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 136164 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 136223 |||||||| ||||| |||| | | || ||||||||||||||| | | || |||||||||| Sbjct 99 GCTCTTATGGTGTAATGGTTAGCGCTCTGGACTTTGAATCCAGCGATCCGGGTTCAAATC 40 Query 136224 CAGGTAGGAGCTT 136236 | ||||||||||| Sbjct 39 CCGGTAGGAGCTT 27 >seq2341 Length=236 Score = 82.4 bits (90), Expect = 9e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 136164 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 136223 |||||||| ||| | |||| | |||| ||||||||||||||| | | || |||||||||| Sbjct 64 GCTCTTATGGTGGAATGGTTAGCACTCTGGACTTTGAATCCAGCGATCCGGGTTCAAATC 123 Query 136224 CAGGTAGGAGCTT 136236 | ||||||||||| Sbjct 124 CCGGTAGGAGCTT 136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589943734456240