Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F000448265.2_202016-06- 02] 5,026 sequences; 39,481,229 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq4314 206 5e-48 seq4688 197 3e-45 >seq4314 Length=236279 Score = 206 bits (228), Expect = 5e-48 Identities = 554/841 (66%), Gaps = 17/841 (2%) Strand=Plus/Minus Query 47842 GTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCCAT 47901 ||| || ||||| | ||||| |||||||| ||||| |||| | ||||| | ||||| Sbjct 46210 GTACTCGCCCACACGCTTCTCGAAGAAGTTAGTCTTGCCCTGTAGAGAGATCATGTCCAT 46151 Query 47902 GAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCAGCAGGTG 47961 || || ||||| ||| || | | | || || | | | ||||||| | Sbjct 46150 CCAGTCAAACGGGTTCTTGACGTTGTAGATCTTGGACACACCAAGCGAATACAGCAGGCG 46091 Query 47962 ATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGACAC 48021 || || ||| |||| ||||| | ||||||| | ||||||||| || || ||| Sbjct 46090 GTCTGCCACGAACTCAATGTACTGGCACATGAGCGCCGAGTTCATGCCGATCAGCTCCAC 46031 Query 48022 GGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTGCTT 48081 || | | | | | |||||| | || |||| ||| || || | | ||||| | Sbjct 46030 TGGGAGCGAGTCGCTCACAAACTCGTGTTCGATCTTCACAGCGTCACGGATAATCTCGTG 45971 Query 48082 AACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAAGTC 48141 || || ||| | | ||| | ||| ||| | || | || || |||||||| Sbjct 45970 CACACGCTGCTCCGGCAGCTTGGTCACCAG---CTTCGAGTACAACAGACAAGCAAAGTC 45914 Query 48142 CCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGAC 48201 |||||| ||||| || || || |||||| |||||||||||| ||||||||||||| Sbjct 45913 TGTGTGCATACCTTCATCACGACTAATGAGCTCGTTGGAGAAGCTCAGACCAGGCATGAG 45854 Query 48202 CCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAG-AGCCAGAGAAGAAGATGCCCTCCA 48260 || | || ||||||||||| || | || |||| |||| ||||||||||| ||||||| Sbjct 45853 ACCACGCTTCTTGAGCCAGAAGATGGA-GCAAAAGGAGCCCGAGAAGAAGATTCCCTCCA 45795 Query 48261 CTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAG---CGTTCTTGTCTGAGATCCAGG 48317 | || || || || || | ||| | | || | | ||| ||| | ||| Sbjct 45794 CAGCTGCAAATGCCAGAAGACGCTCCGGGTATGAGGACACTTTCGGGTC---GCACCATC 45738 Query 48318 AAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAGCT 48377 |||||||| |||||||| | | || || || ||||| || || || | || | Sbjct 45737 TTAGCGCCCAACTCGCCTTCTTGGTCACACACGGGATGGTCTCAATTGCACGCAGCAGGT 45678 Query 48378 TCTTGCACTCACCTGCGTCCGCAACATAGGT---AGTGAGCAGCTTTGCGTACATCTCAG 48434 | ||| | |||||| | || || | |||||||| | ||||| ||| | Sbjct 45677 GGTCCTTCTCCACAGCGTCCTTGATGTACGTGTCAATGAGCAGC---GAGTACACCTCTG 45621 Query 48435 AGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCA 48494 |||| | ||||| || || || ||||| ||||||||| | |||||| |||||| | Sbjct 45620 AGTGGATGTTCTCAATGGCAATTTGGAAGCCGTAGAAGCAACGAGCCTCAGGCACCTGTA 45561 Query 48495 CTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAAGA 48554 |||| || || || ||| ||||| || || || ||||| || ||||||| Sbjct 45560 CTTCATTGCTAAAGTTCATAGCCAGGTTCTCGTTCACGATGCCATCACTGGCGGCAAAGA 45501 Query 48555 AGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGCCCTGTA 48614 |||| | ||| || || | ||| || |||||||||| ||||| |||| ||| | Sbjct 45500 AGGCCAAGACGTGCTTGATGAAGTGACGCTCGTTGTCTGTGAGGTTTCCCCAGTCCTTGA 45441 Query 48615 CGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTTGTACA 48674 ||| | ||| ||||| |||||| ||||||||||| || || || ||||||| Sbjct 45440 GGTCGTGTACCAAGTCCAGCTCTTCCGCAGTCCAGAAGCTGGCCTCCGCCTTCTTGTACA 45381 Query 48675 T 48675 | Sbjct 45380 T 45380 >seq4688 Length=42416 Score = 197 bits (218), Expect = 3e-45 Identities = 895/1401 (64%), Gaps = 36/1401 (3%) Strand=Plus/Plus Query 212948 GTAAAAGTTTGAAGTGTAGGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCT 213007 ||| | ||| || ||| | || ||||| |||||| || || || |||||||| || Sbjct 39901 GTACATGTTAGAGGTGAACGGTTCGATAGACTCGTTATTACCGAGGATCTGTGCCGTAGA 39960 Query 213008 GGCTGTGGGCATGGGAGCCACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGCG 213067 || || ||||| || || |||||||| || | || |||| || | | | Sbjct 39961 CGCCGTCGGCATCGGCGCGACCAGGAGCGAATTGCGCAGGCCGTTCTTGACCACCTTCTC 40020 Query 213068 CCGAAGCTCTGCCCAGTCCCATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGTC 213127 | |||| | ||||||||||| ||||| || | | | ||||||||||| || Sbjct 40021 CTTAAGCGCAGCCCAGTCCCA-----CAGACCGGAGGAAGGCGTG-ACGTTCCACATATC 40074 Query 213128 AAACTGCAAGATGCCTTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTC 213187 ||||| ||||| || ||||| | || |||||| ||| ||| ||||| || Sbjct 40075 GAACTGGAAGATACCCTTGCTGGCAGGCGAACCCTGGAAAGTCTCGTACGGGCCCAATTC 40134 Query 213188 CTTGGCCAGCTCGCAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCT 213247 | ||||||| || |||| || || | ||||||||||||||| || || || | | | Sbjct 40135 CGTGGCCAGTTCCATTGACGTCTCCATAGAAGCGTAGTAGATGGTCTCGAAGATATTCTT 40194 Query 213248 GTTGAGCTTCTTGGCCTCTGGGGACGTGAAGGGCATCATCATGCGTTGGAACACATCAGC 213307 |||||||| ||||| || | ||| | | |||| | ||| | || || Sbjct 40195 GTTGAGCTCACGCGCCTCCGGACTCTCGAACGCAAAGTCCATGAGGATGAAAGCGTCCGC 40254 Query 213308 CAGCCCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGGTTAGACTTG-GAGCACTCCT 213366 || ||||| || || || || | || | ||| | || ||| || ||| |||| ||| Sbjct 40255 AAGGCCCTGCACACCAATACCAACAGGACGGTGACGCATGTTGGAATTGCGAGC-CTCAA 40313 Query 213367 CCAAGGGGTAAAAGTTGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGA 213426 | |||||| ||||| |||||||| |||||| |||||||| ||| ||| ||| || Sbjct 40314 TAACGGGGTAGTAGTTGACGTCGATGACCTTGTTCAGGTTGCGTGTGATCACCTTGACGA 40373 Query 213427 CATGGGCCAGGTACTCGTGATTGAACACGTAGCCCCCGTCCTGCACAAACTCAGGCAGGG 213486 ||| ||| | || || ||||| ||| ||| || || |||| || || | Sbjct 40374 CATCATACAGCTTCTTGTAGTTGAATACG------GCGTTCTCAACGAACTTGGGGAGCG 40427 Query 213487 CGATGCTGGCCAGGTTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTCGG 213546 | | | |||| |||||| ||||||||||| | || || |||||||| | || Sbjct 40428 CCACGGACGCCAAGTTGCACACGGCCACCTCATCAGGCGACGTATACTCCATCACTTCAC 40487 Query 213547 TGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCAG 213606 ||||| |||||| | || || ||||| |||||||| || || ||||| |||||| | Sbjct 40488 AGCACAAGTTGCTCGAGCGAATCGTGCCGAGGTTCTGCTGATTAGACTTGCGGTTGGCGG 40547 Query 213607 AATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCTCC 213666 |||||||| | |||| | || || ||||| | ||| | |||| || | || Sbjct 40548 CGTCCTTGTATAACATGAAAGGCACGCCCGTCTCAATCTGCGCGTCCAGAATAGCGAACC 40607 Query 213667 AGAGGTACCTGGCCTTGACCACCCGCCTGACAGCTCCGGGCGT-AGCCTCGTACTGTTCG 213725 | || | || |||| | || | | ||| | | | |||||||| || Sbjct 40608 ACAGCTGTTGAGCATTGA----TTGTCTTGCGGGCGCGGCCTTCACGCTCGTACTTCTCA 40663 Query 213726 TAGAGCTCGTTGAATTCGTGGCCCCAGACCCTGTCCAGTCCCGGA--CAGGATGCGGGAC 213783 | ||| | ||| || | |||||| | || ||| || ||| | | | ||||| Sbjct 40664 AACAGCGTCTCGAACTCCTCTCCCCAGCACTCGTACAGACCGGGAGCCTCGTT--GGGAC 40721 Query 213784 ACATGAGGCTCCAGTCCCCGTCATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACA 213843 | | | ||||| | || | | || | || |||||| || ||||| ||||||| Sbjct 40722 AGAACAAACTCCACTTGCCATTGGCCTCCACACGCTTCATGAATAGATCCGGCACCCACA 40781 Query 213844 GCGCGGTGAACAGGTC-CCTGGTC--CTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGAT 213900 | || ||||| ||| | || | | ||||| ||| ||| |||||||||| Sbjct 40782 GAGCATAGAACAAGTCACGTGCACGGTGCAGCTCGT---TACCATGGTTCTTGCGCAGAT 40838 Query 213901 CTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCC-GGC 213959 | | || ||||| | || ||||||||||| |||| || || ||||| | ||| || Sbjct 40839 CCAAGAACTCAAACACATCAGCGTGCCACGGTTCCAGATAAATCGCAAATGATCCCTTGC 40898 Query 213960 CTCT--TGCCGCCCTGGTCCACCAGCCTGGCCACCATGTTGAAGATGCGCAGGACGGGTA 214017 | | || ||||||||||| | ||| ||| || | ||||| | ||| | Sbjct 40899 GTTTACCTCCACCCTGGTCCACGTAACGTGCCGTATCGTTAAACACTCGCAGCATGGGGA 40958 Query 214018 CCAGCCCGTTGGACTGTCCGTTGGTTCCCGCTATATACGAGCCGGAGGCCCTCAGGTTGC 214077 | ||||||||| ||||| || || || || | | || | | |||| Sbjct 40959 TGATGCCGTTGGACGAGCCGTTCGTGCCGCGGATGTAGCTGTTAGTAGCTCGGATGTTGT 41018 Query 214078 TCATGGAGAGCCCTATGCCACCGGCGTACTTGGAGATCATGGCGCAGCGCCTCACAGTCT 214137 ||| || || ||||| || || |||||||||| || || | ||| ||| | Sbjct 41019 GCATACTGATGCCAATGCCTCCTGCCCACTTGGAGATGCACGCACACTGTTTCAGAGTGT 41078 Query 214138 CCATGATGCCGGCCATGCTGTCATCTGTGAGGTTCAGCAAGAAGCAGCTCGAGAGCTGGG 214197 | ||||| | || |||||| | | || ||||||||| || | || | Sbjct 41079 CATAAATGCCTTCAATAGAGTCATCCTGCATGGCCAACAAGAAGCACGAAGACAATTGTG 41138 Query 214198 GCCTGGACGAGCCAGAGTTGAAAAGCGTGGGGCTGGCATGGATCATAAACTTGTTAGAGA 214257 | | | | |||| ||||| ||||||||| |||| ||| | | || || | || | Sbjct 41139 GACGTGGGGTACCAGCATTGAACAGCGTGGGGGTGGCGTGGGTGAAGAATTTTTGCGACA 41198 Query 214258 GGAGCCTGTAGGTCTCCAGGACTGAGGGGATG-TCGTGCTTGTGGATCTGTAGAGCGCAC 214316 ||| ||| ||||| || | | |||| |||| ||||||||| |||||| ||| Sbjct 41199 TGAGTTCGTAAGTCTCAAGTGCCGCCTTGATGTTCGT-CTTGTGGATGCCTAGAGC-CAC 41256 Query 214317 -CTCATCAGCATGTGCTGGGG 214336 | ||| | ||| |||||||| Sbjct 41257 GCGCATGATCATCTGCTGGGG 41277 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931474276451840