Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F000448265.2_202016-06- 02] 5,026 sequences; 39,481,229 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq4314 163 5e-35 seq4688 145 1e-29 >seq4314 Length=236279 Score = 163 bits (180), Expect = 5e-35 Identities = 492/754 (65%), Gaps = 21/754 (3%) Strand=Plus/Plus Query 25574 ACGAGCAGCATTTTCTCAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGA 25633 |||||| || || ||||| |||| ||||| |||||||| ||| |||||| || |||| Sbjct 45468 ACGAGCGTCACTTCATCAAGCACGTCTTGGCCTTCTTTGCCGCCAGTGATGGCATCGTGA 45527 Query 25634 ACGAGAATCTGTGCGA-GAGATTCACCAGGGAAGTGCAG-TACGTGGAGGCCAAGTGTTT 25691 ||||||| ||| || | || || | || ||||| ||| | | || |||| || || Sbjct 45528 ACGAGAACCTG-GCTATGAACTTTAGCAATGAAGTACAGGTGCCTG-AGGCTCGTTGCTT 45585 Query 25692 CTACGGTTTCCAGATGGCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGAT 25751 |||||| ||||| || ||||| || || | ||||| |||||||| | ||| || || Sbjct 45586 CTACGGCTTCCAAATTGCCATTGAGAACATCCACTCAGAGGTGTACTC---GCTGCTCAT 45642 Query 25752 G---ACGTACATTACAGACGTCGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACAT 25808 |||||||| | |||| | |||| || | ||| | |||| || ||| ||| Sbjct 45643 TGACACGTACATCAAGGACGCTGTGGAGAAGGACCACCTGCTGCGTGCAATTGAGACCAT 45702 Query 25809 ACCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCG-CTA 25867 || | | | | ||||||| | ||||| | | ||| | || | | || | | Sbjct 45703 CCCGTGTGTGACCAAGAAGGCGAGTTGGGCGCTAAGATGGTGCGACC-CGAAAGTGTCCT 45761 Query 25868 CGTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGT 25927 | | ||||| || | || ||||| ||||||||||| ||||| ||| || || | Sbjct 45762 CATACCCGGAGCGTCTTCTGGCATTTGCAGCTGTGGAGGGAATCTTCTTCTCGGGCTCCT 45821 Query 25928 TTGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACG 25987 || ||||||||||||||||| || || |||||| || ||| ||| ||||||| Sbjct 45822 TTTGCTCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCTGGTCTGAGCTTCTCCAACG 45881 Query 25988 AGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCC 26047 ||||||| || | || || ||| | |||| ||| ||||| || ||| | ||| || Sbjct 45882 AGCTCATTAGTCGTGATGAAGGTATGCACACAGACTTTGCTTGTCTGTTGTACTCG---A 45938 Query 26048 ACTTGCTCCACAAACCTTCTCAAG-AGACCGTCTACAGTATCATCAAAGAGGCTGTGGAG 26106 | || | || || || | || || || || || ||| || |||||| || Sbjct 45939 AGCTGGT-GACCAAGCTGCCGGAGCAGCGTGTGCACGAGATTATCCGTGACGCTGTGAAG 45997 Query 26107 ATCGAGAAGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGA 26166 ||||| | |||||| | ||||||||| Sbjct 45998 ATCGAACACGAGTTTGTGAGCGACTCGCTCCCAGTGGAGCTGATCGGCATGAACTCGGCG 46057 Query 26167 CTCATGAGCCAATACATTGAGTATGTGGCCGACCATCTGCTGTGCCAGCTGGGACTCGCC 26226 |||||| |||| |||||||||| ||||| |||| ||||||| ||| || | || Sbjct 46058 CTCATGTGCCAGTACATTGAGTTCGTGGCAGACCGCCTGCTGTATTCGCTTGGTGTGTCC 46117 Query 26227 AGACTCTACAGTACGCC--TAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGA 26284 | |||||| ||| | |||||||| |||| ||||| | || || | | || | Sbjct 46118 AAGATCTACA--ACGTCAAGAACCCGTTTGACTGGATGGACATGATCTCTCTACAGGGCA 46175 Query 26285 AGACCAACTTCTTTGAAAAGAGGGTCGGCGACTA 26318 |||| |||||||| || ||| | || ||||| || Sbjct 46176 AGACTAACTTCTTCGAGAAGCGTGTGGGCGAGTA 46209 >seq4688 Length=42416 Score = 145 bits (160), Expect = 1e-29 Identities = 484/751 (64%), Gaps = 53/751 (7%) Strand=Plus/Plus Query 221425 AGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTG-GCCTCGGGA-----GA 221478 ||||| |||||||||||| ||||| |||||||||| ||| | ||||| ||| || Sbjct 40165 AGCGTAGTAGATGGTCTCGAAGATATTCTTGTTGAG-CTCACGCGCCTCCGGACTCTCGA 40223 Query 221479 A-GTGAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGA 221537 | | ||| ||| | | |||||| |||| || || ||||| || || ||||| | Sbjct 40224 ACGCAAAGTCCATGAGGA-----TGAAAG-CGTCCGCAAGGCCCTGCACACCAATACCAA 40277 Query 221538 TGGGCCTGTGTCTCCTGTTGGAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGTCGA 221597 || | ||| | | |||||||| | || || ||||| || |||||||||||| Sbjct 40278 CAGGACGGTGACGCATGTTGGAATTGCGAGCCTCAATAACGGGGTAGTAGTTGACGTCGA 40337 Query 221598 TCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGATTGA 221657 | | ||||| ||||| | ||||| || || || || || |||||||| || |||| Sbjct 40338 TGACCTTGTTCAGGTTGCGTGTGATCACCTTGACGACATCATACAGCTTCTTGTAGTTGA 40397 Query 221658 ACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTGGCCA 221717 | | || ||| || || || | || || ||| |||| Sbjct 40398 ATA---------CGGCGT---------TCTCAACGAACTTGGGGAGCGCCACGGACGCCA 40439 Query 221718 GGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGC 221777 ||| |||||||||||||| || ||||||| || | || || | ||||| Sbjct 40440 AGTTGCACACGGCCACCTCATCAGGCGACGTATACTCCATCACTTCACAGCACAAGTTGC 40499 Query 221778 TGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGA 221837 | | || || || |||| | |||||||||||||| ||||| ||||||||||| | Sbjct 40500 TCGAGCGAATCGTGCCGAGGTTCTGCTGATTAGACTTGCGGTTGGCGGCGTCCTTGTATA 40559 Query 221838 GCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCTCTGG 221897 ||| || || |||| ||||| | ||| || ||||||| | ||| || | | | Sbjct 40560 ACATGAAAGGCACGCCCGTCTCAATCTGCGCGTCCAGAATAGCGAACCACAGCTGTTGAG 40619 Query 221898 CGCTCACCGTCCT------CTTGACTGCACCCTCGGTCTTTTCATACCCGGTATAGAGCA 221951 | | | ||| | | || ||| |||| ||| ||| || ||| Sbjct 40620 CATTGATTGTCTTGCGGGCGCGGCCTTCACGCTCGTACTTCTCAAAC---------AGCG 40670 Query 221952 TGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGAC 222011 | || |||| || || | ||||| ||| || ||| | | |||||| | || || Sbjct 40671 TCTCGAACTCCTCTCCCCAGCACTCGTACAGACCGGGAGCCTCGTTGGGACAGAACAAAC 40730 Query 222012 TCCAGTGCTTG---TTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCT 222068 |||| |||| ||| | | || | || |||||| || ||||| | |||||| || | Sbjct 40731 TCCA---CTTGCCATTGGCCTCCACACGCTTCATGAATAGATCCGGCACCCACAGAGCAT 40787 Query 222069 GAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACT 222128 || | || | | || ||| ||| || | ||| || | ||||||||| |||| Sbjct 40788 AGAACAAGTCACGTGCACGGTGCAGCTCGTTACCATGGTTCTTGCGCAGATCCAAGAACT 40847 Query 222129 CAAAAATGTCAGCGTGCCACGGCTCCAGATA 222159 |||| | |||||||||||||| |||||||| Sbjct 40848 CAAACACATCAGCGTGCCACGGTTCCAGATA 40878 Score = 100 bits (110), Expect = 5e-16 Identities = 149/209 (71%), Gaps = 2/209 (1%) Strand=Plus/Plus Query 221050 CAAAAGCTCGGTACGCATCTCGTCCGTCCATAGACCCCTCTCTTCCAGCACCTTGACCAT 221109 ||| | || | |||||| ||| | ||| | |||| ||| |||| | || | || Sbjct 39796 CAAGATCTGGTTACGCACCTCAGGAGCCCACACACCCAGCTCAATCAGCTCATTCATCAG 39855 Query 221110 GTGCTTGTTCACCACTTGGAAA-TCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAG 221168 || ||||||||| | | | ||| ||||||| ||||| | | | ||||| |||||| | Sbjct 39856 GTACTTGTTCACGA-TGGTAAACTCTCCCGCAAGCACGCGGCGGTTGTACATGTTAGAGG 39914 Query 221169 TGAACGGTTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGG 221228 ||||||||||||| |||||| || || |||||||| ||||| || || ||||| | Sbjct 39915 TGAACGGTTCGATAGACTCGTTATTACCGAGGATCTGTGCCGTAGACGCCGTCGGCATCG 39974 Query 221229 GTGCCACCAGCAGACTGTTGCGCAGTCCG 221257 | || ||||| || |||||||| ||| Sbjct 39975 GCGCGACCAGGAGCGAATTGCGCAGGCCG 40003 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928786445325440