Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F000448265.2_202016-06- 02] 5,026 sequences; 39,481,229 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq4688 147 3e-30 seq4314 120 4e-22 >seq4688 Length=42416 Score = 147 bits (162), Expect = 3e-30 Identities = 453/692 (65%), Gaps = 9/692 (1%) Strand=Plus/Minus Query 75128 CGGGACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGCTATCTTCAACGG 75187 || |||| ||| | | ||| ||||| | || || || |||| | | ||||| || Sbjct 41361 CGAGACTTTGAATACGATTATTTTGGCTTTAAGACACTGGAGAGGGGATATCTCTTCCGT 41302 Query 75188 CTCGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATC 75247 || | |||| | ||||| || ||| | ||| ||||||| || || | |||||| Sbjct 41301 GTCCACGGCAAAGTGGTGGAACGTCCCCAGCAGATGATCATGCGCGTGGCTCTAGGCATC 41242 Query 75248 CACGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTC 75307 ||| | |||| | | | | ||||| ||||| ||||| ||| | ||| Sbjct 41241 CACAAGACGAACATCAAGGCGGCACTTGAGACTTACGAACTCATGTCGCAAAAATTCTTC 41182 Query 75308 ATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGC 75367 | ||||| || || || || |||||||||||||| ||| | || || |||| ||| Sbjct 41181 ACCCACGCCACCCCCACGCTGTTCAATGCTGGTACCCCACGTCCACAATTGTCTTCGTGC 41122 Query 75368 TTCCTTATCGCCAACAAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGT 75427 ||| | | |||| |||| ||||| || | || || |||| ||||| | ||||| Sbjct 41121 TTCTTGTTGGCCATGCAGGATGACTCTATTGAAGGCATTTATGACACTCTGAAACAGTGT 41062 Query 75428 GCGCAAATCTCAAAGTGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAAT 75487 ||| ||||| |||||||| || || ||||| || || || | | |||| | | Sbjct 41061 GCGTGCATCTCCAAGTGGGCAGGAGGCATTGGCATCAGTATGCACAACATCCGAGCTACT 41002 Query 75488 AA-ATCTCGTATTCGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGT 75546 || | || || || || || || || || | || || || || ||||| || || Sbjct 41001 AACAGCT-ACATCCGCGGCACGAACGGCTCGTCCAACGGCATCATCCCCATGCTGCGAGT 40943 Query 75547 ATTTAACGCCACAGCGCGCTATGTAAATCAAGCGGGGCGT---CGCAAGGGGTCCATCGC 75603 ||||||| || || || || || | || | || || |||||||| || | || Sbjct 40942 GTTTAACGATACGGCACGTTACGTGGACCAGGGTGGAGGTAAACGCAAGGGATCATTTGC 40883 Query 75604 GGTCTACTTGGAACCATGGCATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCA 75663 | | || ||||||| ||||| || ||| | | |||||| | || | || ||||| Sbjct 40882 GATTTATCTGGAACCGTGGCACGCTGATGTGTTTGAGTTCTTGGATCTGCGCAAGAACCA 40823 Query 75664 AGGTGACGAAGAGGCTCGGTGTA-GAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTT 75722 ||| ||| || || | ||| | | || | || | | |||||| | || || || | Sbjct 40822 TGGTAACG-AGCTGCACCGTGCACGTGACTTGTTCTATGCTCTGTGGGTGCCGGATCTAT 40764 Query 75723 TCATGAAGCGGGTTGAGGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAG 75782 |||||||||| || |||| ||| | ||| | | |||||||| || |||| || | Sbjct 40763 TCATGAAGCGTGTGGAGGCCAATGGCAAGTGGAGTTTGTTCTGTCCCAACGAGGCTCCCG 40704 Query 75783 GTCTCTCCGA-CGCGGTGGGTGAGGAGTTTGA 75813 |||| | ||| || | ||| |||||||| || Sbjct 40703 GTCTGTACGAGTGCTG-GGGAGAGGAGTTCGA 40673 >seq4314 Length=236279 Score = 120 bits (132), Expect = 4e-22 Identities = 330/500 (66%), Gaps = 12/500 (2%) Strand=Plus/Plus Query 65023 AAGAAGGCGAAATGGGCAATGAAATGGTTTGACAC-AAAGTCTCGCTCCTTCGCCGAGCG 65081 |||||||||| ||||| | | ||||| ||| | ||||| || ||| | | | ||||| Sbjct 45716 AAGAAGGCGAGTTGGGCGCTAAGATGGTGCGACCCGAAAGTGTC-CTCATACCCGGAGCG 45774 Query 65082 CCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTATTTA 65141 ||| | || ||||| ||||||||| ||||||||||| || || || ||| | || | Sbjct 45775 TCTTCTGGCATTTGCAGCTGTGGAGGGAATCTTCTTCTCGGGCTCCTTTTGCTCCATCTT 45834 Query 65142 TTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCCCG 65201 ||| | |||||||| ||||||||||| || || ||||||| || || || ||| || Sbjct 45835 CTGGCTCAAGAAGCGTGGTCTCATGCCTGGTCTGAGCTTCTCCAACGAGCTCATTAGTCG 45894 Query 65202 AGATGAGGGTCTCCACCAGGAGTTTGCCGTGGAGCTCTTCAAGACTTTGCGTAATAGACC 65261 ||||| ||| | ||| || ||||| | | | | || || || |||| Sbjct 45895 TGATGAAGGTATGCACACAGACTTTGCTTGTCTGTTGTACTCGAAGCTG-GT----GACC 45949 Query 65262 CA-CTACCGAAAC----TATCCACGCCATCGTGAAAGAGGCGGTTGAGATTGAGAAAGGG 65316 | || ||| | | | | |||| || | || || || |||| || | | | Sbjct 45950 AAGCTGCCGGAGCAGCGTGTGCACGAGATTATCCGTGACGCTGTGAAGATCGAACACGAG 46009 Query 65317 TTCATCTTGGACGCACTCCCATGTAATCTCATCGGTATGAACTCTGAGAAGATGTCCGAG 65376 || | ||| | |||||| | || ||||| |||||||| | | |||| | || Sbjct 46010 TTTGTGAGCGACTCGCTCCCAGTGGAGCTGATCGGCATGAACTCGGCGCTCATGTGCCAG 46069 Query 65377 TACATTGAGTATGTGTCGGATCGTCTCCTCAAACAAGTTGGGGTGCCACCCATTTGGAAC 65436 |||||||||| ||| | || || || || | |||| ||| | || | ||| Sbjct 46070 TACATTGAGTTCGTGGCAGACCGCCTGCTGTATTCGCTTGGTGTGTCCAAGATCTACAAC 46129 Query 65437 GCGAAGAATCCATTTGACTTTATGGAAAACATTAGCCTTGATGGGAAGACCAACTTCTTT 65496 | ||||| || ||||||| ||||| | || || | || ||||| |||||||| Sbjct 46130 GTCAAGAACCCGTTTGACTGGATGGACATGATCTCTCTACAGGGCAAGACTAACTTCTTC 46189 Query 65497 GAGAAGCGAGTTGGGGACTA 65516 |||||||| || || || || Sbjct 46190 GAGAAGCGTGTGGGCGAGTA 46209 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596532120514880