Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F000448265.2_202016-06- 02] 5,026 sequences; 39,481,229 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq4688 127 6e-24 seq1862 116 1e-20 seq4962 114 4e-20 >seq4688 Length=42416 Score = 127 bits (140), Expect = 6e-24 Identities = 455/708 (64%), Gaps = 5/708 (1%) Strand=Plus/Plus Query 155667 ATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAGCATCCTTGTATAGAATGTAT 155726 || ||||| | |||| ||| ||||| || | ||| || |||||||||| ||| | Sbjct 40508 ATCGTGCCGAGGTTCTGCTGATTAGACTTGCGGTTGGCGGCGTCCTTGTATAACATGAAA 40567 Query 155727 GGGGTTCCTGTCTCCATCTGTGCGTCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATT 155786 || || ||||| ||||| ||||||||||| | ||| || | | ||||| ||| Sbjct 40568 GGCACGCCCGTCTCAATCTGCGCGTCCAGAATAGCGAACCACAGCTGTTGAGCATTGATT 40627 Query 155787 TGCTTGTTGTATCTGCCTTCCGACTCATATTTCATATACAGCGTTCGGTAATCCTCACCG 155846 |||| | | |||||| ||| || ||| | ||||||| | | ||||| || Sbjct 40628 GTCTTGCGGGCGCGGCCTTCACGCTCGTACTTCTCAAACAGCGTCTCGAACTCCTCTCCC 40687 Query 155847 TAACAATCACTCAGTCCAGGGCACTTATCGGGGCAAAACAGCGACCAAATTTTATTACCG 155906 | || || ||| || || || | ||| || |||| ||| | ||| | Sbjct 40688 CAGCACTCGTACAGACCGGGAGCCTCGTTGGGACAGAACAAACTCCACTTGCCATTGGCC 40747 Query 155907 ATTACACGCTCCATAAATACATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGC-CTT 155965 ||||||| ||| |||| ||| | |||| | ||||||||| | ||| | ||| | Sbjct 40748 TCCACACGCTTCATGAATAGATCCGGCACCCACAGAGCATAGAACAAGTCACGTGCACGG 40807 Query 155966 TGACTCCTCATCGCCGTGATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTG 156025 || | ||| | || || ||||| || || || ||||| || | ||||| || Sbjct 40808 TG-CAGCTCGTTACCATGGTTCTTGCGCAGATCCAAGAACTCAAACACATCAGCGTGCCA 40866 Query 156026 TGGCTCCAGATACATAGCAAAACTACCATTCCTCTT---GCCACCCTGATCTACATACCG 156082 || |||||||| || ||||| || || | || |||||||| || || || || Sbjct 40867 CGGTTCCAGATAAATCGCAAATGATCCCTTGCGTTTACCTCCACCCTGGTCCACGTAACG 40926 Query 156083 AGCAGTCTTATTGAAGACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCC 156142 || || | || || || | ||||| || || || || ||||| | ||| || || || Sbjct 40927 TGCCGTATCGTTAAACACTCGCAGCATGGGGATGATGCCGTTGGACGAGCCGTTCGTGCC 40986 Query 156143 GCGAATATGCGAACCAGATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCA 156202 ||| || | || | || | || || ||| | ||||| || |||| ||| Sbjct 40987 GCGGATGTAGCTGTTAGTAGCTCGGATGTTGTGCATACTGATGCCAATGCCTCCTGCCCA 41046 Query 156203 TTTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTC 156262 || || || || || | || | ||| | |||| ||||||||||| ||||| | Sbjct 41047 CTTGGAGATGCACGCACACTGTTTCAGAGTGTCATAAATGCCTTCAATAGAGTCATCCTG 41106 Query 156263 CATTGATAGTAGATAGCACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGT 156322 ||| | | | |||||||| ||||| || ||||| || ||||| ||||| || || Sbjct 41107 CATGGCCAACAAGAAGCACGAAGACAATTGTGGACGTGGGGTACCAGCATTGAACAGCGT 41166 Query 156323 AGGTGTTGCATGAATAAAATACTTATTAGACATATAATCGTATGTCTC 156370 || || || || | || | || | ||||| ||||| ||||| Sbjct 41167 GGGGGTGGCGTGGGTGAAGAATTTTTGCGACATGAGTTCGTAAGTCTC 41214 >seq1862 Length=51216 Score = 116 bits (128), Expect = 1e-20 Identities = 160/224 (71%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 251488 CCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGAGCC 251547 |||||||| |||| |||||| ||||||||||| || | |||||||||||| |||||||| Sbjct 11899 CCGTGTGAGATCAGACAATCGCGCTCCATTTCTCCCATACGAAGACCACCCTCGCGAGCA 11840 Query 251548 CTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAGCGGCTATGTTGC 251607 | |||||| |||||||| || || | || ||||| || || || | Sbjct 11839 CGACCCTCCATGGGCTGACGCGTCAGCATCGTCACGGGACCACGCGACCGAGAGTGAATC 11780 Query 251608 TTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAAGATGCTCGAA 251667 || || | ||||||||||| | ||||||||||||| || ||||||||||| | | Sbjct 11779 TTGTCGTCGACCATATGCTTCAAGCGCTGGTAGAATGTCGGGCCGATGAAGATCTGTGCA 11720 Query 251668 GGCATTTGCTCTCCAGTTAGAGCGTTATACATAACTTCGTTTCC 251711 | || | ||||| || | ||||||| |||||||| || Sbjct 11719 GTCAGCCGGCGGCCAGTATGACCACTATACATGACTTCGTTGCC 11676 >seq4962 Length=66780 Score = 114 bits (126), Expect = 4e-20 Identities = 261/385 (68%), Gaps = 16/385 (4%) Strand=Plus/Plus Query 302490 GTCAATTCCGTCATCGCCGTA--GGAATACTGAATGATTTTGTTCTTGTT-ATTTCTTAC 302546 ||| || || || ||||| || ||||| |||||||||| | |||| ||||| || Sbjct 61163 GTCCATACCATCCTCGCCATAAAGGAAT--TGAATGATTTCGC-CTTGCGCATTTCGAAC 61219 Query 302547 GGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATA 302606 || ||| || | |||||| | |||||| ||| | | || |||||||| || Sbjct 61220 CGTACCATCGTATCTCGTCATAACGGACTCCATAGCCTTCACCAGTCGGCGCTGAATGTA 61279 Query 302607 ACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATG 302666 || ||| || || || |||||||||||||| | ||| ||||||||||||| || || Sbjct 61280 TCCCGTTTCAGCGGTCTTGACAGCTGTATCAATCAAACCTTCACGACCACCCATGGCGTG 61339 Query 302667 GAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGC 302726 |||||| | ||| | || || ||| | | || |||| ||||||||||| Sbjct 61340 GAAGAAGAACTCCTGTGGGGTCAGACCCTTCAAGTACGAATTCTCCACGAAACCACGACT 61399 Query 302727 CTCGGG---CGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTA 302783 ||||| | |||||| ||| |||| || || || | | | | ||||| Sbjct 61400 TTCGGGGCCCAGATCGTC---TTTGCCGTAGTGCGGAAGTGTACGATGGTTGAAACCGTA 61456 Query 302784 TGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATT 302843 |||||||| || || || || |||||||| |||| || | ||| |||||||| || || Sbjct 61457 CGGGATACGTTTACCTTCGACATTCTGCTGACCCACACAAGCAATAATCTGCGAGATGTT 61516 Query 302844 --TAAATCACTGCCCTTGGAGCCAG 302866 |||| | |||||||| |||| Sbjct 61517 AATAAAGGA--ACCCTTGGAACCAG 61539 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471722821385762