Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F000448265.2_202016-06- 02] 5,026 sequences; 39,481,229 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq4807 113 4e-20 seq4688 105 6e-18 seq3693 91.5 1e-13 >seq4807 Length=216255 Score = 113 bits (124), Expect = 4e-20 Identities = 170/241 (71%), Gaps = 2/241 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || || || |||||||| || || | | Sbjct 80 ATGCAGATCTTCGTGAAGACACTGACGGGCAAGACCATCACGCTCGACGTGGAGCCTTCG 139 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| | | || | || || || || ||||||||||| ||||| || || || || || Sbjct 140 GACTCGATCGACAATGTGAAGCAGAAAATCCAAGACAAGGAAGGCATCCCGCCTGACCAG 199 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| ||||||| ||||| || ||||||||||| | | || || || ||| Sbjct 200 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGCGACTACAAC 259 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCGGAACTGAGCCA 24943 || || ||||| || ||||| ||| ||||| | || |||| || | | |||||| ||| Sbjct 260 ATCCAGAAGGAGTCTACACTTCACCTGGTGCTTCGCCTGCGTGGCG--GTAACTGAACCA 317 Query 24944 A 24944 | Sbjct 318 A 318 >seq4688 Length=42416 Score = 105 bits (116), Expect = 6e-18 Identities = 393/609 (65%), Gaps = 9/609 (1%) Strand=Plus/Plus Query 139389 GCCGTTCGCCTTGACGCGCCTCATGAACAGATCCGGAATCCACAAAGCGAACAGCAAATC 139448 ||| || |||| || ||| ||||||| |||||||| | ||||| ||| | | ||| || Sbjct 40738 GCCATTGGCCTCCACACGCTTCATGAATAGATCCGGCACCCACAGAGCATAGAACAAGTC 40797 Query 139449 GCGCGCCTTCTT-ATCTTCCGAACCCATGTTACGTTT-CATGTTAAGGAAATCAAAAACG 139506 || || | | || || ||||| | | | || | | ||| ||||| || Sbjct 40798 ACGTGCACGGTGCAGCT--CGTTACCATGGTTCTTGCGCAGATCCAAGAACTCAAACACA 40855 Query 139507 TCAGCGTGCCATGGTTCCAGATAGATGGCCATTGCGCCTTTCCGTTT---GCCACCTTGA 139563 ||||||||||| ||||||||||| || || | || || || ||||| ||||| || Sbjct 40856 TCAGCGTGCCACGGTTCCAGATAAATCGCAAATGATCCCTTGCGTTTACCTCCACCCTGG 40915 Query 139564 TCGACGTGTCGTACAGCATTATTGAATACGCGCAACATCGGCTCCAGACCGCTCGCTGTT 139623 || |||| ||| | | || || || || |||| ||| || | ||| | | | Sbjct 40916 TCCACGTAACGTGCCGTATCGTTAAACACTCGCAGCATGGGGATGATGCCGTTGGACGAG 40975 Query 139624 CCGTTGGTGCTACGGATGGGACTGTTGCGAGCTCGGACGTCATGTACATTGATGCCGATT 139683 ||||| |||| |||||| ||||| |||||||| || || | | ||||||| || Sbjct 40976 CCGTTCGTGCCGCGGATGTAGCTGTTAGTAGCTCGGATGTTGTGCATACTGATGCCAATG 41035 Query 139684 CCGCCGCCAAATTTGGATATTAAAACGCAATCGCGTAATGTCTCGTATATACCTCTTATG 139743 || || | | ||||| || | | || | | || || || || ||| || Sbjct 41036 CCTCCTGCCCACTTGGAGATGCACGCACACTGTTTCAGAGTGTCATAAATGCCTTCAATA 41095 Query 139744 CTGTCGTCCTGCATCGTGACCAGAAAGCATGACGAAAGTTGCGGTAGTTTCGTGCCGGCT 139803 ||| |||||||| | | || ||||| || || | ||| || || || || || Sbjct 41096 GAGTCATCCTGCATGGCCAACAAGAAGCACGAAGACAATTGTGGACGTGGGGTACCAGCA 41155 Query 139804 GCAAACAGAGTAGGACTCGCGTGCGTGAACATTTGTTTCGACATCAATTCGTACGTTTCG 139863 ||||| || || | ||||| ||||| | || || |||||| | |||||| || || Sbjct 41156 TTGAACAGCGTGGGGGTGGCGTGGGTGAAGAATTTTTGCGACATGAGTTCGTAAGTCTCA 41215 Query 139864 A-TGGCGCTCACAATATCCCTTCCGTGGATACCGACAGAGACTCGCATCAGCATATGTTG 139922 | || ||| | || | | | |||||| || | || || ||||| | ||| || || Sbjct 41216 AGTGCCGC-CTTGATGTTCGTCTTGTGGATGCCTAGAGCCACGCGCATGATCATCTGCTG 41274 Query 139923 GATCCGTTCGGCCACCGCGCCCTCGAtttttttCAGATAACCGTTCTCTAGGGTCTTGTA 139982 | ||||| |||| ||| | || ||||| || |||| || ||||| | Sbjct 41275 GGGACGTTCCACCACTTTGCCGTGGACACGGAAGAGATATCCCCTCTCCAGTGTCTTAAA 41334 Query 139983 GCCAAAGTA 139991 |||||| || Sbjct 41335 GCCAAAATA 41343 >seq3693 Length=10515 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || || || || || |||||||| || || | | Sbjct 8118 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACGCTCGACGTGGAGCCGTCG 8177 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||| | || | || || || || ||||| ||||| || ||||| || || || || Sbjct 8178 GACAGCATTGACAATGTCAAGCAGAAAATCCAGGACAAGGAGGGAATTCCGCCTGACCAG 8237 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGA 24858 || ||| ||||||| ||||| || ||||| ||||| Sbjct 8238 CAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAGGA 8272 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449869335183280