Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F000448265.2_202016-06- 02] 5,026 sequences; 39,481,229 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq4314 194 3e-43 seq4819 147 3e-29 seq4868 134 2e-25 seq4688 87.8 3e-11 >seq4314 Length=236279 Score = 194 bits (214), Expect = 3e-43 Identities = 242/328 (74%), Gaps = 8/328 (2%) Strand=Plus/Minus Query 793893 ACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGC 793952 ||||| ||||||| ||||||||||| ||| |||||| ||||| |||||||||| || Sbjct 46224 ACGCCTGCCTTGGAGTACTCGCCCACACGCTTCTCGAAGAAGTTAGTCTTGCCCTGTAGA 46165 Query 793953 GAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCAC---CCG 794009 ||||||| |||||||| |||||||| | | | || || ||| | || || Sbjct 46164 GAGATCATGTCCATCCAGTCAAACGGGTT---CTTGACGTTGTAGATCTTGGACACACCA 46108 Query 794010 AGCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTC 794069 ||||| ||||||||||| || ||||| |||||||||||||||||||| || | |||| Sbjct 46107 AGCGAATACAGCAGGCGGTCTGCCACGAACTCAATGTACTGGCACATGAGCGCCGAGTTC 46048 Query 794070 ATGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCC 794129 |||||||| ||| |||| || ||||| ||||| |||||||| | ||||||| || || Sbjct 46047 ATGCCGATCAGCTCCACTGGGAGCGAGTCGCTCACAAACTCGTGTTCGATCTTCACAGCG 45988 Query 794130 TCGATGATGATCTGCCTGGGCACG-TCGGACGACGGCTTGTCGACGAGCATCGTGTAGAG 794188 || ||| |||| | || |||| | || | ||||| || ||| ||| ||| | Sbjct 45987 TCACGGATAATCT-CGTGCACACGCTGCTCCGGCAGCTTGGTCACCAGCTTCGAGTACAA 45929 Query 794189 CAGGCAGGCAAAGTCGCAATGCAGACCT 794216 ||| || |||||||| |||| |||| Sbjct 45928 CAGACAAGCAAAGTCTGTGTGCATACCT 45901 Score = 179 bits (198), Expect = 6e-39 Identities = 240/331 (73%), Gaps = 11/331 (3%) Strand=Plus/Minus Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399 |||||| || ||||| || | |||||| |||| || || |||||||| || ||||| Sbjct 45904 ACCTTCATCACGACTAATGAGCTCGTTGGAGAAGCTCAGACCAGGCATGAGACCACGCTT 45845 Query 794400 CTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 794459 ||||||||| ||||||| || || ||||||||| ||||| ||||| || || ||||| Sbjct 45844 CTTGAGCCAGAAGATGGAGCAAAAGGAGCCCGAGAAGAAGATTCCCTCCACAGCTGCAAA 45785 Query 794460 GCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTT---GTTGATCCACTTCATCGC 794516 | | || ||||| | | | | || |||| || | ||| | | ||| Sbjct 45784 TGCCAGAAGACGCTCCGGGTATGAGGACA------CTTTCGGGTCGCACCATCTTAGCGC 45731 Query 794517 CCA-CTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCT 794575 ||| ||| ||||| || |||| | || | || || || || || | |||||||||| Sbjct 45730 CCAACTC-GCCTTCTTGGTCACACACGGGATGGTCTCAATTGCACGCAGCAGGTGGTCCT 45672 Query 794576 TCTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGT 794635 |||| || | |||||||| ||| ||||| ||||| |||||||| |||||||||||||| Sbjct 45671 TCTCCACAGCGTCCTTGATGTACGTGTCAATGAGCAGCGAGTACACCTCTGAGTGGATGT 45612 Query 794636 TTTCGATGGCGATCTGGAAGCCATAAAAGCA 794666 | || ||||| || |||||||| || ||||| Sbjct 45611 TCTCAATGGCAATTTGGAAGCCGTAGAAGCA 45581 Score = 131 bits (144), Expect = 3e-24 Identities = 163/220 (74%), Gaps = 10/220 (5%) Strand=Plus/Minus Query 796186 GCCAGGTTCTCAGCCACGATGCCGTCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATA 796245 ||||||||||| ||||||||| || |||||||| || ||||| | |||||||||||| Sbjct 45540 GCCAGGTTCTCGTTCACGATGCCATCACTGGCGGCAAAGAAGGCCAAGACGTGCTTGATG 45481 Query 796246 AAGTGACGCTCGTCGTCGCTGAGCGAGACCCAGTGGACCGT---GTCGGCGCCGAGGTCG 796302 ||||||||||||| ||| |||| |||||| || | |||| | | ||| Sbjct 45480 AAGTGACGCTCGTTGTCTGTGAGGTTTCCCCAGT---CCTTGAGGTCGTGTACCAAGTCC 45424 Query 796303 ACCTCCTCGGCGGTCCAAAAGGAGGCCTCGGCCTTTTTGTACATCTCCCATATCCGT--T 796360 | ||| || || ||||| ||| |||||| ||||| |||||||||| ||| | ||| | Sbjct 45423 AGCTCTTCCGCAGTCCAGAAGCTGGCCTCCGCCTTCTTGTACATCTGCCACA--CGTCGT 45366 Query 796361 GGTAGCGGATGGGGAACAGAACAAAGCGATTGGGGTTCTC 796400 | | |||||||||| || || ||||| || ||||| || Sbjct 45365 GCTCCTGGATGGGGAATAGCACGAAGCGGTTCGGGTTTTC 45326 >seq4819 Length=134324 Score = 147 bits (162), Expect = 3e-29 Identities = 188/259 (73%), Gaps = 0/259 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 || ||||||| || ||||| || ||||| || ||||||||| |||| || || || ||| Sbjct 27765 TGAACTTGGTCACAGCCTTCGTGCCCTCCGACACGGCGTGCTTGGCAAGCTCACCAGGCA 27706 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || || ||||| || ||||||||||||||| || | ||| |||||| | Sbjct 27705 GCATGAGACGCACAGCCGTCTGGATCTCGCGGCTGGACAGCGTCGACTTCTTGTTGTAAC 27646 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 ||| ||| ||||||||| | ||||||| |||| |||||||||| |||||||||| Sbjct 27645 GCGACAGCTTGCCGGCCTCCGACGCGATGCGCTCGAAGATGTCGTTGATGAACGAGTTCA 27586 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||||||||| ||| ||| ||| || ||||||||||| |||||||||| Sbjct 27585 TGATCGACATGCCCCGCTTGCTGATACCCGTCTCAGGGTGCACCTGACGCAGCACCTTGT 27526 Query 1485710 AAACAAAGGACGAGTACGA 1485728 | | ||| |||||||| Sbjct 27525 AGATGTAGGTGGAGTACGA 27507 >seq4868 Length=160646 Score = 134 bits (148), Expect = 2e-25 Identities = 185/259 (71%), Gaps = 0/259 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 || ||||||| || ||||| || || || || ||||||||| ||||||| || || | | Sbjct 1123 TGAACTTGGTCACAGCCTTCGTGCCTTCAGACACGGCGTGCTTGGCCAGCTCACCCGGGA 1182 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || || ||||| || ||||||||||| ||| || | ||| |||||| | Sbjct 1183 GCATGAGACGCACAGCAGTCTGGATCTCACGGCTGGACAGCGTCGACTTCTTGTTGTAAC 1242 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 ||| ||| |||||||| | | ||||| |||| |||||||||| |||||||||| Sbjct 1243 GCGACAGCTTACCGGCCTCCGACGCAATGCGCTCGAAGATGTCGTTGATGAACGAGTTCA 1302 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||||||||| ||| ||| ||| |||||||||||||| |||||||||| Sbjct 1303 TGATCGACATACCGCGCTTGCTGATACCCGTCTCGGGGTGCACCTGGCGCAGCACCTTGT 1362 Query 1485710 AAACAAAGGACGAGTACGA 1485728 | | ||| |||||||| Sbjct 1363 AGATGTAGGTAGAGTACGA 1381 >seq4688 Length=42416 Score = 87.8 bits (96), Expect = 3e-11 Identities = 349/538 (65%), Gaps = 20/538 (4%) Strand=Plus/Plus Query 2069253 GTCGACGGTAAACTGGATGGCGTTGGCGGCAGGCCGGGTGCGCAGATAGTACATGCCGGT 2069312 ||| ||||| ||||||||||||| || || || ||||| ||||||||||| || Sbjct 39517 GTCCACGGTGAACTGGATGGCGTCAGCTTTCGGGCGTCCGCGCATGTAGTACATGCCCGT 39576 Query 2069313 CTTGAGGCCGCGACGCCACGCGTAGGCGTGCATCGACGTGATGGACTCGGCATT---CGG 2069369 |||||| || ||||||||| ||||||||| || | || | || ||| Sbjct 39577 CTTGAGCCCCTTCTTCCACGCGTAAAAGTGCATCGATGTAAG---CTTGCTTTTTGTCGG 39633 Query 2069370 GACGGCACAGTAGAGGTTGAGCGACTGGCTCTGGTCGACATAGGGCGCGCGGTCGGCCGC 2069429 |||| || | ||| |||||||| ||||| || |||| | || || || | Sbjct 39634 TTCGGCGATGTGAATGTTCAGCGACTGACTCTGACAGATGTAGGCACCACGATCCGCAGA 39693 Query 2069430 CATGTCGATGGTC-ACG-CGGTTGGACACCTCCCACACGGTCTTGAACAGGGCCTTGAGA 2069487 || ||| | || || | | | || ||||||||| |||||| || |||||| Sbjct 39694 CAGGTCCAGAATCGACTTCTGCTTGAT--CTCCCACACCGTCTTGTACTTCTCCTTGATG 39751 Query 2069488 TGCGGCGGCACCTCGTCGTCATCAAAGCCCTGCACCGAGCC-CTGCGCTGCGATGAGGCG 2069546 || ||| | | | ||| | | |||||||| || | | | | | || | Sbjct 39752 TGGTCCGGAA-----TGGAGCTCACATTC-TGCACCGAACCGCCGTCATTCAA-GATCTG 39804 Query 2069547 GTCGCGAAAGTCGGGCGTCCACAGGCCGCGCGCCATCATGCGC-TCGACCAGGTGGCGGT 2069605 || || | || || | ||||| || || | |||| || | | | ||||| || Sbjct 39805 GTTACGCACCTCAGGAGCCCACACACCCAGCTCAATCA-GCTCATTCATCAGGTACTTGT 39863 Query 2069606 TGACCACGGTAAAGTCGCCCGAGAGCACGCGGCGCGTGTAGATGTTGCTCGTGATGACCT 2069665 | || | |||||| || |||| ||||||||||| |||| ||||| |||| | Sbjct 39864 TCACGATGGTAAACTCTCCCGCAAGCACGCGGCGGTTGTACATGTTAGAGGTGAACGGTT 39923 Query 2069666 CGCACGCCTCGGTGTTGCCCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCCACGA 2069725 || | |||| | || || |||||||| | ||| | ||||| ||||| |||| || | Sbjct 39924 CGATAGACTCGTTATTACCGAGGATCTGTGCCGTAGACGCCGTCGGCATCGGCGCGACCA 39983 Query 2069726 GCAGCGAGTTGCGCAGGCCGTACTGTCGCACCAGCGCCCGCAGGGCGTCCCAGTCCCA 2069783 | ||||| ||||||||||||| || |||| | || || || |||||||||| Sbjct 39984 GGAGCGAATTGCGCAGGCCGTTCTTGACCACCTTCTCCTTAAGCGCAGCCCAGTCCCA 40041 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915711761456414