Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F000448265.2_202016-06- 02] 5,026 sequences; 39,481,229 total letters Query= NC_022988.1 Length=74210 Score E Sequences producing significant alignments: (Bits) Value seq4820 104 1e-17 >seq4820 Length=127298 Score = 104 bits (114), Expect = 1e-17 Identities = 321/493 (65%), Gaps = 13/493 (3%) Strand=Plus/Minus Query 64836 ATCGACGCTGAGCACTCCCTGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGACCTCGAC 64895 ||||| ||||| ||| || | ||| || | |||||||||||| | ||||| ||| |||| Sbjct 38202 ATCGATGCTGAACACGCCATTGACGCTCACTACGCCAAGGCGTTGGGTGTCGACATCGAT 38143 Query 64896 AACCTCGTGGTGGTTCAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTC 64955 | || || ||||| || | |||||| | || |||| |||| || || Sbjct 38142 GAGCTGTACGTTTCCCAGCCCGATTCGGGCGAGGAAGCTTTGGAAATCGCCGATACTCTG 38083 Query 64956 GTCAAGTCTGGCGAGCTGTCCATC--GTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGC 65013 || ||| || | ||||| | | ||||| | || ||| || || || || |||| Sbjct 38082 ATCCGGTCCGGTG--CTGTCGACCTTGTCGTGCTGGATAGTGTAGCAGCTCTCGTACCGC 38025 Query 65014 GCGCCGAGCTCGAAGGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGT 65073 | || ||||| || || || || || ||| || | | ||||| |||||||||||| Sbjct 38024 GTGCTGAGCTGGAGGGTGAAATGGGTGACCAGCAGATTGCACTGCAAGCGCGCCTCATGA 37965 Query 65074 CGCAGGCCATGCGCAAGCTCACCGGCACCATCTCCAGCACCAAC---ACGCTGACGCTCT 65130 || || ||||||||||||| || | | |||| ||||| || | | ||| Sbjct 37964 GTCAAGCTTTGCGCAAGCTCACAGGTTCGCTGTCCAAGTCCAACTGTACCATCA---TCT 37908 Query 65131 GGGTCAACCAGTTGCGCGAGAAGATCGGCAACGTGGGCTACGGCCCGAATGAGACCACCA 65190 | |||||| | ||| ||||| | |||| | || || | |||| || Sbjct 37907 TCCTGAACCAGATCCGCCAGAAGGTTGGCA---TTATCTTTGGATCTCCTGAGGTGACAT 37851 Query 65191 CGGGCGGCAAGGCTTTGAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCA 65250 | || || | ||||| | | |||||| || || || | ||| |||| |||| | Sbjct 37850 CTGGTGGAACAGCTTTACGCTACTACGCGTCCGTACGGCTAGATATCCGCCGCAAAACGG 37791 Query 65251 CCGAGAAGGAAGGCGATGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAACA 65310 || || || ||||| ||| ||| |||||| || || ||||| | ||||||| Sbjct 37790 CCATCAAAGAGGGCGACCAGGTTGTAGGCAACGAGACGGTAGTCAAGGTGGCTAAGAACA 37731 Query 65311 AGCTGGCCCCGCC 65323 |||||||| |||| Sbjct 37730 AGCTGGCCTCGCC 37718 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 237332661445606