Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F000448265.2_202016-06- 02] 5,026 sequences; 39,481,229 total letters Query= NC_024450.1 Length=204054 Score E Sequences producing significant alignments: (Bits) Value seq4752 84.2 3e-11 seq4490 84.2 3e-11 seq3847 84.2 3e-11 seq3751 84.2 3e-11 seq2472 84.2 3e-11 seq2280 84.2 3e-11 seq1777 84.2 3e-11 >seq4752 Length=800 Score = 84.2 bits (92), Expect = 3e-11 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 8660 CTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTCCC 8719 ||||||||||||||||||||||| |||| ||||| | |||| |||| |||||| |||||| Sbjct 95 CTCGTTAGTATAGTGGTTAGTATACCCGCCTGTCACGCGGGTGACCCGGGTTCAATTCCC 154 Query 8720 CGACGAGGAGC 8730 |||| | ||| Sbjct 155 GGACGGGAAGC 165 Score = 84.2 bits (92), Expect = 3e-11 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 8660 CTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTCCC 8719 ||||||||||||||||||||||| |||| ||||| | |||| |||| |||||| |||||| Sbjct 672 CTCGTTAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGTGACCCGGGTTCAATTCCC 731 Query 8720 CGACGAGGAGC 8730 |||| | ||| Sbjct 732 GGACGGGAAGC 742 >seq4490 Length=168330 Score = 84.2 bits (92), Expect = 3e-11 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 8660 CTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTCCC 8719 ||||||||||||||||||||||| |||| ||||| | |||| |||| |||||| |||||| Sbjct 168175 CTCGTTAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGTGACCCGGGTTCAATTCCC 168234 Query 8720 CGACGAGGAGC 8730 |||| | ||| Sbjct 168235 GGACGGGAAGC 168245 >seq3847 Length=114781 Score = 84.2 bits (92), Expect = 3e-11 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 8660 CTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTCCC 8719 ||||||||||||||||||||||| |||| ||||| | |||| |||| |||||| |||||| Sbjct 114413 CTCGTTAGTATAGTGGTTAGTATACCCGCCTGTCACGCGGGTGACCCGGGTTCAATTCCC 114354 Query 8720 CGACGAGGAGC 8730 |||| | ||| Sbjct 114353 GGACGGGAAGC 114343 >seq3751 Length=590 Score = 84.2 bits (92), Expect = 3e-11 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 8660 CTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTCCC 8719 ||||||||||||||||||||||| |||| ||||| | |||| |||| |||||| |||||| Sbjct 205 CTCGTTAGTATAGTGGTTAGTATACCCGCCTGTCACGCGGGTGACCCGGGTTCAATTCCC 146 Query 8720 CGACGAGGAGC 8730 |||| | ||| Sbjct 145 GGACGGGAAGC 135 >seq2472 Length=211 Score = 84.2 bits (92), Expect = 3e-11 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 8660 CTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTCCC 8719 ||||||||||||||||||||||| |||| ||||| | |||| |||| |||||| |||||| Sbjct 56 CTCGTTAGTATAGTGGTTAGTATACCCGCCTGTCACGCGGGTGACCCGGGTTCAATTCCC 115 Query 8720 CGACGAGGAGC 8730 |||| | ||| Sbjct 116 GGACGGGAAGC 126 >seq2280 Length=278 Score = 84.2 bits (92), Expect = 3e-11 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 8660 CTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTCCC 8719 ||||||||||||||||||||||| |||| ||||| | |||| |||| |||||| |||||| Sbjct 180 CTCGTTAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGTGACCCGGGTTCAATTCCC 239 Query 8720 CGACGAGGAGC 8730 |||| | ||| Sbjct 240 GGACGGGAAGC 250 >seq1777 Length=211 Score = 84.2 bits (92), Expect = 3e-11 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 8660 CTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTCCC 8719 ||||||||||||||||||||||| |||| ||||| | |||| |||| |||||| |||||| Sbjct 56 CTCGTTAGTATAGTGGTTAGTATACCCGCCTGTCACGCGGGTGACCCGGGTTCAATTCCC 115 Query 8720 CGACGAGGAGC 8730 |||| | ||| Sbjct 116 GGACGGGAAGC 126 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 652803785025440