Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F000448265.2_202016-06- 02] 5,026 sequences; 39,481,229 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq4688 280 1e-70 seq4807 158 1e-33 seq4314 125 7e-24 seq3693 125 7e-24 >seq4688 Length=42416 Score = 280 bits (310), Expect = 1e-70 Identities = 1189/1848 (64%), Gaps = 60/1848 (3%) Strand=Plus/Plus Query 147953 GCGCAGATAGTACATGCCCGTCTTGAGGCCCATGCGCCATGCGTAGTCGTGCACCGACGA 148012 ||||| |||||||||||||||||||| ||| | ||| ||||| ||||| ||| | Sbjct 39556 GCGCATGTAGTACATGCCCGTCTTGAGCCCCTTCTTCCACGCGTAAAAGTGCATCGATG- 39614 Query 148013 CATGAGCGTG---TACGTCGGGTGCGGC-ACAAACAGATTAAACGACTGGCTCTGGTCAA 148068 | ||| || | ||||| | |||| | | || | |||||| ||||| | Sbjct 39615 --TAAGCTTGCTTTTTGTCGGTT-CGGCGATGTGAATGTTCAGCGACTGACTCTGACAGA 39671 Query 148069 TGAACGCGCCACGGTCAGCGGCCATTTCAATGAGTCGCTTTAT-CTTCATCTCCCAGGCC 148127 || | || ||||| || || | || || | || ||| || | ||| |||||||| || Sbjct 39672 TGTAGGCACCACGATCCGCAGACAGGTCCA-GAATCGACTTCTGCTTGATCTCCCACACC 39730 Query 148128 GTCTTGTACAGCCGCTTGATATGATCGGGAATGCCGTCGATGCGCTGCACCGAGCCGCGG 148187 ||||||||| | |||||| || || |||||| | | ||||||||| |||| | Sbjct 39731 GTCTTGTACTTCTCCTTGATGTGGTCCGGAATGGAGCTCACATTCTGCACCGAACCGCCG 39790 Query 148188 TGCGCAAAAATCTGATTGCGCATTTCGTCCGTGTATAGGTTGAGCTCGATCAGGTCATCG 148247 | || ||||| || |||| || | | | ||||| ||||| |||| Sbjct 39791 TCATTCAAGATCTGGTTACGCACCTCAGGAGCCCACACACCCAGCTCAATCAGCTCATTC 39850 Query 148248 ATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCAGATACACGTTG 148307 ||||| |||| ||||| | |||||| || || |||||||| || |||| ||| Sbjct 39851 ATCAGGTACTTGTTCACGATGGTAAACTCTCCCGCAAGCACGCGGCGGTTGTACATGTTA 39910 Query 148308 CTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCCGTGGGC 148367 || |||||||| | |||||||| || || | ||||| || || | ||||| ||| Sbjct 39911 GAGGTGAACGGTTCGATAGACTCGTTATTACCGAGGATCTGTGCCGTAGACGCCGTCGGC 39970 Query 148368 ATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGCGCTTCAGAGCC 148427 || ||| ||||| ||||| ||||||| ||| || | || ||| || || Sbjct 39971 ATCGGCGCGACCAGGAGCGAATTGCGCAGGCCGTTCTTGACCACCTTCTCCTTAAGCGCA 40030 Query 148428 GCCCAGTCCCAGAG--CGGCG-ACGGTGTCACGTTCCACATGTCGTACTGCAGAATGCCG 148484 ||||||||||| || ||| | | || || ||||||||||| ||| |||| | || || Sbjct 40031 GCCCAGTCCCACAGACCGGAGGAAGGCGTGACGTTCCACATATCGAACTGGAAGATACCC 40090 Query 148485 CGGCTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCGCCAGTTCGCAG 148544 ||| || || |||| | | | |||||| || ||| |||||||| Sbjct 40091 TTGCTGGCAGGCGAACCCTGGAAAGTCTCGTACGGGCCCAATTCCGTGGCCAGTTCCATT 40150 Query 148545 CTCGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAGCA---GCGCC 148601 || ||| | | ||||||| || |||||| || | | |||||||| ||||| Sbjct 40151 GACGTCTCCATAGAAGCGTAGTAGATGGTCTCGAAGATATTCTTGTTGAGCTCACGCGCC 40210 Query 148602 GCCG-ACTCGCTTTCGTACGGCATACGCAGCCGCACAAACGCGTCGGCAAGGCCCTGTAC 148660 ||| |||| ||| ||| | || | | || ||||| ||||||||||| || Sbjct 40211 TCCGGACTC----TCGAACGCAAAGTCCATGAGGATGAAAGCGTCCGCAAGGCCCTGCAC 40266 Query 148661 GCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTCTCGAGC-GGATAGT 148719 || | |||| || ||||| |||||||| ||| || ||| | | || |||| Sbjct 40267 ACCAATACCAACAGGACGGTGACGCATGTTGGAATTGCGAGC-CTCAATAACGGGGTAGT 40325 Query 148720 GGTTGCGGTCGATGATCTTGTCAAGATTGCGCACCACCACCTT-----TGTAATTCTGC- 148773 |||| |||||||| ||||| || ||||| | |||||| | || | || Sbjct 40326 AGTTGACGTCGATGACCTTGTTCAGGTTGCGTGTGATCACCTTGACGACATCATACAGCT 40385 Query 148774 -GCAGCAATTCAAAATCGTACTTGTCATCTACGATGCATCGGTTCACGGCGATAGAGGCT 148832 | | || || | || || ||| |||| | | || | || | || || Sbjct 40386 TCTTGTAGTTGAATA-CGGCGTTCTCA---ACGA-ACTTGGG--GAGCGCCACGGACGCC 40438 Query 148833 AGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCACAGATTG 148892 | |||||||||||| |||||| || | | ||||| | | || ||||| ||| Sbjct 40439 AAGTTGCACACGGCCACCTCATCAGGCGACGTATACTCCATCACTTCACAGCACAAGTTG 40498 Query 148893 CTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCCTTGTAC 148952 || | ||| ||| | ||||| ||||| ||||| |||| ||||||||||| Sbjct 40499 CTCGAGCGAATCGTGCCGAGGTTCTGCTGATTAGACTTGCGGTTGGCGGCGTCCTTGTAT 40558 Query 148953 AGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTAT---GAACCGATGCAGGTCC 149009 | |||| | || |||| || || | ||||| |||| || ||||| ||| | Sbjct 40559 AACATGAAAGGCACGCCCGTCTCAATCTGCGCGTCCAGAATAGCGAACC---ACAGCTGT 40615 Query 149010 TGCGCGCGCACTTGCTGCTCGTAGCGACCCTCCTGCTCGTATAAAGTATACAGCCGCTCG 149069 || || | | || | ||| || || ||||||| | ||||| |||| Sbjct 40616 TGAGCATTGATTGTCTTGCGGGCGCGGCCTTCACGCTCGTACTTCTCAAACAGCGTCTCG 40675 Query 149070 AACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGTGCGGGCACATGAGCGACCAC 149129 ||| |||| || |||| |||| |||||||| || || || || | | |||| Sbjct 40676 AACTCCTCTCCCCAGCACTCGTACAGACCGGGAGCCTCGTTGGGACAGAACAAACTCCAC 40735 Query 149130 ACGCCGTCCGCGTACACGCGCTTCATAAACAGATCGGGCACCCAGAGCGCGTACATGAGG 149189 ||| | || | ||| |||||||| || ||||| |||||||| || || || | | | Sbjct 40736 TTGCCATTGGCCTCCACACGCTTCATGAATAGATCCGGCACCCACAGAGCATAGAACAAG 40795 Query 149190 T--CGCGCGCCTTGCAGTCTTCGGCGCCCATGTTGCGGCGCAGGT-TGAGCACGCTGAAT 149246 | || || | ||||| ||| || ||| |||||| | || || | || Sbjct 40796 TCACGTGCACGGTGCAG--CTCGTTACCATGGTTCTTGCGCAGATCCAAGAACTC-AAAC 40852 Query 149247 ATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCCCTTGCGCTT---GCCGCCC 149303 | || ||||||||||| || | || | ||| | | |||||||| || || ||| Sbjct 40853 ACATCAGCGTGCCACGGTTCCAGATAAATCGCAAATGATCCCTTGCGTTTACCTCCACCC 40912 Query 149304 TGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAACCATAGGTTCAATGCCACTGGCA 149363 ||||| |||| || || | | |||||||||||| | ||| || ||||| ||| Sbjct 40913 TGGTCCACGTAACGTGCCGTATCGTTAAACACTCGCAGCATGGGGATGATGCCGTTGGAC 40972 Query 149364 GTGCCGTTAGTAGAGCTAATGCGACTGCCGCGCGCTCGCACTTTGTGCACGTTGACGCCG 149423 | |||||| || || ||| ||| ||||| | ||||||| ||| ||| Sbjct 40973 GAGCCGTTCGTGCCGCGGATGTAGCTGTTAGTAGCTCGGATGTTGTGCATACTGATGCCA 41032 Query 149424 ATGCCGCCGCCGTACTTTGAGATGGCCGCGCA--GTCGCCGAGCGTCGAGTAGATGCCCT 149481 ||||| || | |||| |||||| ||| || || | ||| ||| || ||||| | Sbjct 41033 ATGCCTCCTGCCCACTTGGAGATGCACGCACACTGTTTCAGAGTGTC--ATAAATGCCTT 41090 Query 149482 CGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGAGCACATTTGCGGAAAACGCGTGC 149541 | || ||| || ||||| || || |||||||| ||| ||| ||| | || | Sbjct 41091 CAATAGAGTCATCCTGCATGGCCAACAAGAAGCACGAAGACAATTGTGGACGTGGGGTAC 41150 Query 149542 CGGCCGCGAACATGGTGGGGCTGGCGTGTGTAAAATATTTCTGGCTCATCATCTCGTACG 149601 | || ||||| |||||| ||||||| || || |||| || ||| | ||||| | Sbjct 41151 CAGCATTGAACAGCGTGGGGGTGGCGTGGGTGAAGAATTTTTGCGACATGAGTTCGTAAG 41210 Query 149602 ACTCGAGCACGCGGTCCATGTCATCGCC--ATGGATGCCTATGGCGACGCGCATCAGCAT 149659 ||| || | | |||| ||| | |||||||||| || |||||||| | ||| Sbjct 41211 TCTCAAGTGCCGCCTTGATGT--TCGTCTTGTGGATGCCTAGAGCCACGCGCATGATCAT 41268 Query 149660 ATGCTGCGGTCGCTCCGCCACTTTGTTTCCAATTTTGAGCAAGTAGCCGTTTTCTAGTGT 149719 ||||| || || ||| |||||||| | || | || || | || ||||| Sbjct 41269 CTGCTGGGGACGTTCCACCACTTTGCCGTGGACACGGAAGAGATATCCCCTCTCCAGTGT 41328 Query 149720 CTTGTAGCCAAAGTACTTGTAGTCAAAGTCGCGGCCGTGGTCAATGGC 149767 ||| ||||||| || | ||| |||||||| ||| | ||| |||||| Sbjct 41329 CTTAAAGCCAAAATAATCGTATTCAAAGTCTCGGTCATGGATAATGGC 41376 >seq4807 Length=216255 Score = 158 bits (174), Expect = 1e-33 Identities = 156/199 (78%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| ||||| || ||||| |||| || |||| ||| |||||| ||||||||||| Sbjct 276 GTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACC-GTCCTCCAGCTGCTTGCC 218 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || || ||||||||||| || ||||||||||||||||| ||| || ||||| Sbjct 217 GGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCTTGGATTTTCTGCTT 158 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | || | || ||| | ||||||||||||| |||| ||| ||||| ||||| || Sbjct 157 CACATTGTCGATCGAGTCCGAAGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTCAGTGT 98 Query 133643 TTTTACGAAAATCTGCATG 133661 || ||||| ||||||||| Sbjct 97 CTTCACGAAGATCTGCATG 79 >seq4314 Length=236279 Score = 125 bits (138), Expect = 7e-24 Identities = 288/424 (68%), Gaps = 11/424 (3%) Strand=Plus/Minus Query 120354 GTACTCGCCGACGCGTTTCTCAAAAAAGTTTGTTTTGCCCTCCATCGAAATGTTGTTCAT 120413 ||||||||| || || ||||| || ||||| || ||||||| | || || ||| ||| Sbjct 46210 GTACTCGCCCACACGCTTCTCGAAGAAGTTAGTCTTGCCCTGTAGAGAGATCATGTCCAT 46151 Query 120414 AAACTCGAACGGGTTGCTCGCGTTAAAGTATTTCGGCTGGCCCAACTG--TACGAGCAGT 120471 | || |||||||| | |||| || || | || |||| | ||| ||||| Sbjct 46150 CCAGTCAAACGGGTTCTTGACGTTGTAG-ATCTTGGACACACCAAGCGAATAC-AGCAGG 46093 Query 120472 CGGTCCGCTACAAACTCAATGTACTCGCACATGGACTGCGCGTTCATGCCCAGCAACGCC 120531 ||||| || || ||||||||||||| ||||||| | || ||||||||| | || | || Sbjct 46092 CGGTCTGCCACGAACTCAATGTACTGGCACATGAGCGCCGAGTTCATGCCGATCAGCTCC 46033 Query 120532 ACCGGCAACGCCGACG-TGAAAAACTCCTTCTCAATGTCCACCGCCTCCTTGAACATGGC 120590 || || | || | || | | |||||| | || || | ||| || || || || | Sbjct 46032 ACTGGGAGCG-AGTCGCTCACAAACTCGTGTTCGATCTTCACAGCGTCACGGATAATCTC 45974 Query 120591 GAGCATAGTGTGGCCGGGCATCTTGTGTTCGATGCGCGTTCG-GTAGTACAGGCACGCAA 120649 | ||| | || | |||| |||| || || |||| ||| |||| || |||| Sbjct 45973 GTGCACACGCTGCTCCGGCAGCTTG-GTCACCAGC---TTCGAGTACAACAGACAAGCAA 45918 Query 120650 AGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTCAGGCCGGGCA 120709 |||| ||||||| || || || || || ||||||||| || |||| || |||| Sbjct 45917 AGTCTGTGTGCATACCTTCATCACGACTAATGAGCTCGTTGGAGAAGCTCAGACCAGGCA 45858 Query 120710 TGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAGAACACGCCCT 120769 ||| || | |||||| |||| |||| | |||| |||||| ||||| | |||| Sbjct 45857 TGAGACCACGCTTCTTGAGCCAGAAGATGGAGCAAAAGGAGCCCGAGAAGAAGATTCCCT 45798 Query 120770 CCAC 120773 |||| Sbjct 45797 CCAC 45794 >seq3693 Length=10515 Score = 125 bits (138), Expect = 7e-24 Identities = 122/157 (78%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564 |||||||||||||||||| ||| | || || ||||||||||| || || || || ||||| Sbjct 8273 GTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGAATTCCCTCCTT 8214 Query 133565 GTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624 ||| ||| || ||||||| | |||| |||| | ||||||||||||| |||| Sbjct 8213 GTCCTGGATTTTCTGCTTGACATTGTCAATGCTGTCCGACGGCTCCACGTCGAGCGTGAT 8154 Query 133625 GGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCATG 133661 ||| ||||| ||||| || || || || ||||||||| Sbjct 8153 GGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCATG 8117 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483390429088240