Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F000448265.2_202016-06- 02] 5,026 sequences; 39,481,229 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq4401 224 1e-53 >seq4401 Length=89758 Score = 224 bits (248), Expect = 1e-53 Identities = 328/455 (72%), Gaps = 14/455 (3%) Strand=Plus/Minus Query 146882 TGGGGAAGGGTCGGGGGTTCCTGGCCAGCTGAATTTTCAGGGGCTCCACGTGGTTGAGGT 146941 ||||||| ||||| ||| | | | ||||| ||| || ||||| |||||||| |||| Sbjct 88753 TGGGGAATGGTCGCGGGGTGCGCGTTAGCTGTTTTTGAAGCGGCTCTACGTGGTTCAGGT 88694 Query 146942 AGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCCGGCTTAAGGCCGGTCACGTGGG 147001 | ||||| || || || | |||| | ||| || || || || | || | ||| |||| Sbjct 88693 ATACGTGTGCATCACCAATAATGTGGATAAATTCGCCAGGTTTCAAACCAGCCACTTGGG 88634 Query 147002 CCACCATGTAG-GTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGGACCCCCAGGCCCATG 147060 |||| | || | || || |||| || ||||| |||||||| || || || ||||||||| Sbjct 88633 CCACAA-GTCGCGTCAGTAGCGCATAACTGGCGATGTTGAACGGCACGCCGAGGCCCATG 88575 Query 147061 TCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTCGGCCACGTAAAACTGGCAC 147120 || |||| | |||||||| ||| ||||| | ||| || || |||||||||||||| || Sbjct 88574 TCAGCCGAACGCTGGTACATCTGACACGATAACTCGCCATCCGCCACGTAAAACTGACAA 88515 Query 147121 AGGATGTGGCACGGCGGCAGCGCCATGGCGGGCAGGTCCGCGGGGTTCCAGGCCGAGACC 147180 | ||||| || || ||||||||||| | || ||||| || ||||| || || | | Sbjct 88514 AACATGTGACATGGTGGCAGCGCCATCTCATTGAGATCCGCTGGATTCCACGCAGACAAC 88455 Query 147181 ACCAGCCGCCTG-CTCTCGGGGTTCCTCTTAATCTCTTCGATAACCCACCTCAGC----T 147235 || | ||| | | | ||||| || | || | | | ||| ||||||||| | Sbjct 88454 ACAATCCGACGGTCGGTCGGGTTTGTGCGTAGT-TTGTGGAT----CACCTCAGCAAGTT 88400 Query 147236 GGTCCACGCCCTGGCCCCCGTAGTTTGTCCCGCA-GTCCACGTACCTGGCCCCAAAGTGC 147294 | ||||| ||||| || ||||| || | ||| ||| |||| |||| |||||||| Sbjct 88399 GATCCACCCCCTGTCCAGTGTAGTCTG-CATGCATATCCGTGTACTTGGCTCCAAAGTGA 88341 Query 147295 CTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCC 147329 | ||||||||| || |||||||| |||||||| || Sbjct 88340 CGCCACTGGAATCCATACACTGGTCCCAGGTCTCC 88306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583451342366400