Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F000448265.2_202016-06- 02] 5,026 sequences; 39,481,229 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq4314 284 2e-70 seq4819 127 3e-23 seq4868 120 4e-21 seq4789 116 5e-20 seq4858 114 2e-19 >seq4314 Length=236279 Score = 284 bits (314), Expect = 2e-70 Identities = 421/587 (72%), Gaps = 16/587 (3%) Strand=Plus/Plus Query 1455731 GATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTAC 1455790 || |||||||||||||| || || |||||||||| | || | ||| | |||||| Sbjct 45326 GAAAACCCGAACCGCTTCGTGCTATTCCCCATCCAGGAGCACGACGTGTGGCAGATGTAC 45385 Query 1455791 CAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGGCGCCGAC---AC 1455847 || ||||| |||||| ||| ||||| || || ||| | ||| | | |||| | Sbjct 45386 -AAGAAGGCGGAGGCCAGCTTCTGGACTGCGGAAGAGCTGGACTTGGTACACGACCTCAA 45444 Query 1455848 GGTCCACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTT 1455907 || |||||| || | ||| ||||||| || ||||||||||||||| | ||||| Sbjct 45445 GG---ACTGGGGAAACCTCACAGACAACGAGCGTCACTTCATCAAGCACGTCTTGGCCTT 45501 Query 1455908 TTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGG 1455967 ||| |||||||| |||||||||||| |||||||||||| ||||| || || | Sbjct 45502 CTTT-GCCGCCAGTGATGGCATCGTGAACGAGAACCTGGCTATGAACTTTAGCAATGAAG 45560 Query 1455968 TCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACT 1456027 | || |||| ||||| |||| || ||||| ||||| || ||||| || |||||||||| Sbjct 45561 TACAGGTGCCTGAGGCTCGTTGCTTCTACGGCTTCCAAATTGCCATTGAGAACATCCACT 45620 Query 1456028 CTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACC 1456087 | || |||||||| || || ||||| ||| |||||||| | || ||||||||||||| Sbjct 45621 CAGAGGTGTACTCGCTGCTCATTGACACGTACATCAAGGACGCTGTGGAGAAGGACCACC 45680 Query 1456088 TCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGT 1456147 | | || || || || || | |||| |||| || ||||| |||||| | | | Sbjct 45681 TGCTGCGTGCAATTGAGACCATCCCGTGTGTGACCAAGAAGGCGAGTTGGGCGCTAAGAT 45740 Query 1456148 GGATCAACAAGGA--GGGCCTCGACACTTTGCCGAGCGGCTCGTCGGCTTTGCCGC-GTC 1456204 || | || | | | |||| | || | ||||| || | | ||||| || || Sbjct 45741 GGTGCGACCCGAAAGTGTCCTC-ATAC---CCGGAGCGTCTTCTGGCATTTGCAGCTGTG 45796 Query 1456205 GAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTC 1456264 ||||| ||||| ||||||||| || ||| ||||||| |||||||||||||| || ||| Sbjct 45797 GAGGGAATCTTCTTCTCGGGCTCCTTTTGCTCCATCTTCTGGCTCAAGAAGCGTGGTCTC 45856 Query 1456265 ATGCCCGGTCTTCTGCTTTAGCAACGAATTTATCAGTCGCGACGAAG 1456311 ||||| |||| | |||| |||||| | || ||||| || |||| Sbjct 45857 ATGCCTGGTC-TGAGCTTCTCCAACGAGCTCATTAGTCGTGATGAAG 45902 Score = 181 bits (200), Expect = 2e-39 Identities = 244/330 (74%), Gaps = 10/330 (3%) Strand=Plus/Plus Query 1456447 AGGTTTGCACTGTGACTTTGCCTGTCTGCTCTACACGATGCTCGTCAACAAGCCGTCG-A 1456505 |||| ||||| |||||||| |||||| | ||| ||| ||| || | ||||| | || | Sbjct 45901 AGGTATGCACACAGACTTTGCTTGTCTGTTGTACTCGAAGCTGGTGACCAAGCTGCCGGA 45960 Query 1456506 CCGACGTGCCCAAGCAGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCG 1456565 | |||| || | |||| ||| || || || ||||||| | |||||||| |||| Sbjct 45961 GCAGCGTGTGCACG-AGATTATCCGTGACGCTGTGAAGATCGAACACGAGTTTGTGAGCG 46019 Query 1456566 AGTCGCTGCCGGTGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAA 1456625 | ||||| || |||| ||| |||||||||||| | ||||||||||||||||||||| | Sbjct 46020 ACTCGCTCCCAGTGGAGCTGATCGGCATGAAC-TCGGCGCTCATGTGCCAGTACATTG-A 46077 Query 1456626 TTTTGTCGCCGACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGC-- 1456683 || || || ||||||||||| |||| || || | ||| |||| ||| | Sbjct 46078 GTTCGTGGCAGACCGCCTGCTGTATTCGCTTGG-TGTGTCCAAGATCTAC--AACGTCAA 46134 Query 1456684 CAACCCGTTCCCATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCG 1456743 |||||||| |||||||| ||||||| || |||||||||| ||||| |||||| Sbjct 46135 GAACCCGTTTGACTGGATGGACATGATCTCTCTACAGGGCAAGACTAACTTCTTCGAGAA 46194 Query 1456744 CCGCGT-GGCGAGTACGCCAAGGCCGGCGT 1456772 || || ||||||||| ||||||| ||||| Sbjct 46195 GCGTGTGGGCGAGTACTCCAAGGCAGGCGT 46224 >seq4819 Length=134324 Score = 127 bits (140), Expect = 3e-23 Identities = 176/245 (72%), Gaps = 6/245 (2%) Strand=Plus/Plus Query 724896 TCGTACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCA 724955 |||||||| ||| |||||||||||||| ||||||||||| || | | | Sbjct 27507 TCGTACTCCACCTACATCTACAAGGTGCTGCGTCAGGTGCACCCTGAGACGGGT-----A 27561 Query 724956 TCCTCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATC 725015 || | | | | | |||||||||||||||||||| |||||||||| |||| |||||| Sbjct 27562 TCAGCAAGCGGGGC-ATGTCGATCATGAACTCGTTCATCAACGACATCTTCGAGCGCATC 27620 Query 725016 GGCACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAG 725075 | | |||||||| ||| |||| | ||||||| ||| | || |||||| Sbjct 27621 GCGTCGGAGGCCGGCAAGCTGTCGCGTTACAACAAGAAGTCGACGCTGTCCAGCCGCGAG 27680 Query 725076 ATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAG 725135 |||||||| || ||||| || || ||| || || || |||| ||||||||| || ||| Sbjct 27681 ATCCAGACGGCTGTGCGTCTCATGCTGCCTGGTGAGCTTGCCAAGCACGCCGTGTCGGAG 27740 Query 725136 GGCAC 725140 ||||| Sbjct 27741 GGCAC 27745 >seq4868 Length=160646 Score = 120 bits (132), Expect = 4e-21 Identities = 176/248 (71%), Gaps = 12/248 (5%) Strand=Plus/Minus Query 724896 TCGTACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCA 724955 |||||||| ||| |||||||||||||| |||||||||||| || | | | Sbjct 1381 TCGTACTCTACCTACATCTACAAGGTGCTGCGCCAGGTGCACCCCGAGACGGGT-----A 1327 Query 724956 TCCTCCAACAAGTCC---ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGC 725012 || | |||| | |||||||||||||||||||| |||||||||| |||| ||| Sbjct 1326 TC----AGCAAGCGCGGTATGTCGATCATGAACTCGTTCATCAACGACATCTTCGAGCGC 1271 Query 725013 ATCGGCACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGC 725072 || | | ||||||||| ||| |||| | ||||||| ||| | || || Sbjct 1270 ATTGCGTCGGAGGCCGGTAAGCTGTCGCGTTACAACAAGAAGTCGACGCTGTCCAGCCGT 1211 Query 725073 GAGATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCC 725132 ||||||||||| || ||||| || || | | || || ||||||| ||||||||| || Sbjct 1210 GAGATCCAGACTGCTGTGCGTCTCATGCTCCCGGGTGAGCTGGCCAAGCACGCCGTGTCT 1151 Query 725133 GAGGGCAC 725140 || ||||| Sbjct 1150 GAAGGCAC 1143 >seq4789 Length=25444 Score = 116 bits (128), Expect = 5e-20 Identities = 197/281 (70%), Gaps = 12/281 (4%) Strand=Plus/Plus Query 1152833 CCGTCGTAGGGCTGCTTGCGCGCGATGATCTCCCACATGACGACGCCAAACGAGTAGACA 1152892 |||||||| || || || || || ||||||||| ||||||| ||| |||||| | ||| Sbjct 5526 CCGTCGTACGGACACTCGCCCGTGACGATCTCCCAGATGACGATGCCGAACGAGAACACA 5585 Query 1152893 TCGGCCTTTTCCGAATACTTTTCGCCGCGCAAGATCTCGGGCGCCGTCCACGCCGGCGTG 1152952 |||||||| |||| ||||| | | || || | || |||||| ||||| | || Sbjct 5586 TCGGCCTTCTCCGTGTACTTCTGGTTGCCCAGCACTTCTGGCGCCATCCACTGCACAGTC 5645 Query 1152953 CCGCAG---CGGGTCATCGT---CGCATTGTCCTGGCGGATGCGGGCAAAGCCAAAGTCG 1153006 |||||| | ||||| || | ||| ||| || || |||| ||||||||| Sbjct 5646 CCGCAGTTACCTGTCATGGTCTGCACATGAGCCT---TGACTCGAGCAAGGCCAAAGTCT 5702 Query 1153007 GCCACCTTGACGGTGAAATTGTCGTCGACGAGCAGGTTGGACGACTTTTGGAGGTCGCGG 1153066 | | |||| | |||| || | ||| || |||| ||||| |||| || |||||| ||| Sbjct 5703 GAAAGTTTGATGTTGAAGTTCTTGTCCACCAGCAAGTTGG--GACTCTT-GAGGTCTCGG 5759 Query 1153067 TGCACGATCGGCCGTTCGCGCCCGTGCAGATAGGCCACGCC 1153107 |||| ||||| ||||| ||||||||| | || ||| Sbjct 5760 TGCAGAATCGGTCGTTCAAAGTGGTGCAGATACGACATGCC 5800 >seq4858 Length=119236 Score = 114 bits (126), Expect = 2e-19 Identities = 254/375 (68%), Gaps = 6/375 (2%) Strand=Plus/Minus Query 332873 AAGCGCAGGATGGCACAACGGCTCTGCAGGGCCTCGATGACCATTGACGACGTGTTGCAG 332932 ||||| || |||||||| || ||||| | || || || | | | | || |||| ||| Sbjct 31713 AAGCGTAGAATGGCACAGCGACTCTGGATGGGTTCAATAATCTTGGTAGAATTGTTACAG 31654 Query 332933 GCCAGGGCAAACCGCGTCGTAT-TGGTATGCTTTTCCATGGTCGACCGGAGGGCCTGTTG 332991 ||||| || ||||| || || || | | | | |||| || || || ||||| || Sbjct 31653 GCCAGAGCGAACCGTGTGGTGGCTGAGAAGATCT-CCATAGTGCGGCGTAGAGCCTGCTG 31595 Query 332992 GGCCGCCGGCGTGAGGCAGTCGGCCTCGTCGAGGATGATGATCTTGTGGCGCCCGTGCGG 333051 || || | ||| | | |||| |||||||| ||||||| |||||||||||| || |||| Sbjct 31594 CGCTGCTGCCGTCATGGAGTCTGCCTCGTCCAGGATGACGATCTTGTGGCGTCCAGGCGG 31535 Query 333052 CAGATCAACCCTTTTCGAGGCGTGGTGTTTGATGATCTTGCGCACGACGTCCACGCCGCG 333111 ||| ||| | | |||| ||||| | |||| || ||| | ||| || Sbjct 31534 CAGCGTCACCTTCTGTTGGGCGAACATCTTGATCTTGCTGCGTACAGTGTCGATGCCTCG 31475 Query 333112 CTCGTCCGACGCGTTGAGTTCGAGCACGGCCT-CGTC-GGCGGCCGCACCCAAGAGGACG 333169 ||||||||||||||||| || ||||| |||| | || | | | || | || | Sbjct 31474 GTCGTCCGACGCGTTGAGCTCCAGCACCGCCTGCTTCATACTGTTG--CCTAGAAGTTCC 31417 Query 333170 CGCGCCAGGCACGCGATGCTCGTGGTCTTGCCCGTGCCGGGCGGACCCGCCAGCAAGAGG 333229 || |||| ||| |||||| ||||| || || || || || || |||| || | || Sbjct 31416 CGAGCCAAACACAAGATGCTGGTGGTTTTACCGGTTCCTGGAGGGCCCGAGAGGATCAGA 31357 Query 333230 TTGGGCATGTTGCCG 333244 || | |||||| ||| Sbjct 31356 TTCGTCATGTTACCG 31342 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177326433062212