Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F000448265.2_202016-06- 02] 5,026 sequences; 39,481,229 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq4401 149 5e-31 seq4314 98.7 8e-16 >seq4401 Length=89758 Score = 149 bits (164), Expect = 5e-31 Identities = 317/468 (68%), Gaps = 18/468 (4%) Strand=Plus/Plus Query 40857 AGGGATGAAGGTGATCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCAAAA 40916 ||||| | ||| || || || || || |||||||| |||| ||| || |||||||| || Sbjct 88297 AGGGAAGTAGGAGACCTGGGACCAGTGTATGGATTCCAGTGGCGTCACTTTGGAGCCAAG 88356 Query 40917 TATGACAC---TATGTACTCTGATTATACCAATAAAGGAATGGATCAA-TTACAGTGCGT 40972 || ||| |||| | | || || || | || |||||||| || | | | || Sbjct 88357 TA---CACGGATATGCATGCAGACTACACTGGACAGGGGGTGGATCAACTTGCTGAG-GT 88412 Query 40973 TATAGA-----TACGATTAAATCCGATCCCGATAGCCGACGTATAATATTGTGCGCGTGG 41027 || | |||| ||| |||| |||| ||| || || | |||| |||||| Sbjct 88413 GATCCACAAACTACGCACAAACCCGA--CCGA---CCGTCGGATTGTGTTGTCTGCGTGG 88467 Query 41028 AACCCAACGGACGTACATTTGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTAC 41087 || ||| |||| | || |||||| ||||||| ||||| |||| |||||||||||| Sbjct 88468 AATCCAGCGGATCTCAATGAGATGGCGCTGCCACCATGTCACATGTTTTGTCAGTTTTAC 88527 Query 41088 GTTTGCAATGGTGAACTGTCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGG 41147 || |||| || | || ||||| |||| || | || | ||||||||| || || Sbjct 88528 GTGGCGGATGGCGAGTTATCGTGTCAGATGTACCAGCGTTCGGCTGACATGGGCCTCGGC 88587 Query 41148 GTCCCGTTTAACATAGCGAGTTATGCTCTGCTCACGTATATGATTGCACACGTTACCAAT 41207 || ||||| ||||| || |||||||| || || ||| | | || || || | | Sbjct 88588 GTGCCGTTCAACATCGCCAGTTATGCGCTACTGACGCGACTTGTGGCCCAAGTGGCTGGT 88647 Query 41208 TTAAAACCTGGTGAATTTGTTCACACGTTAGGAGATGGACATATTTACATTAATCACATA 41267 || |||||||| |||||| | |||| | || |||| ||| | ||| | || ||| || Sbjct 88648 TTGAAACCTGGCGAATTTATCCACATTATTGGTGATGCACACGTATACCTGAACCACGTA 88707 Query 41268 GAGCCGTTAACAGAACAACTGACACGAAAACCTAGACCATTTCCAACG 41315 |||||| | | |||| || || || | || ||||||| || ||| Sbjct 88708 GAGCCGCTTCAAAAACAGCTAACGCGCACCCCGCGACCATTCCCCACG 88755 >seq4314 Length=236279 Score = 98.7 bits (108), Expect = 8e-16 Identities = 292/444 (66%), Gaps = 11/444 (2%) Strand=Plus/Plus Query 43850 GTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTT 43909 || ||||| || ||||| || || || || || || || || || ||| || ||| Sbjct 45491 GTCTTGGCCTTCTTTGCCGCCAGTGATGGCATCGTGAACGAGAACCTGGCTATGAACTTT 45550 Query 43910 GCGCAA-GAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGA 43968 |||| ||||| || | || || || || || || || || || ||||||||||| || Sbjct 45551 A-GCAATGAAGTACAGGTGCCTGAGGCTCGTTGCTTCTACGGCTTCCAAATTGCCATTGA 45609 Query 43969 AAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGA 44028 || || || || || ||||| || || || || ||||||||||| || | || Sbjct 45610 GAACATCCACTCAGAGGTGTACTCGCTGCTCATTGACACGTACATCAAGGACGCTGTGGA 45669 Query 44029 GAAGCATCGATTGTTTAATGCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGACT- 44087 |||| | | || | ||| || || || | || | | | | || ||| || | Sbjct 45670 GAAGGACCACCTGCTGCGTGCAATTGAGACCATCCC-GTGTGTGACCAAGAAGGCGAGTT 45728 Query 44088 GGGCCCTTAAATGGATAAATTCAAATGATTCTTTT-----GGAGAACGACTTGTCGCGTT 44142 |||| || | |||| | | || | || | |||| || ||| | || || Sbjct 45729 GGGCGCTAAGATGGTGCGACCCGAAAGTGTCCTCATACCCGGAG--CGTCTTCTGGCATT 45786 Query 44143 TGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAA 44202 ||||| |||||| || || ||||| || || || ||| |||| || ||| | ||||| Sbjct 45787 TGCAGCTGTGGAGGGAATCTTCTTCTCGGGCTCCTTTTGCTCCATCTTCTGGCTCAAGAA 45846 Query 44203 ACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTT 44262 || ||| | |||||||| ||| || || || ||| | || |||||||||||||| | Sbjct 45847 GCGTGGTCTCATGCCTGGTCTGAGCTTCTCCAACGAGCTCATTAGTCGTGATGAAGGTAT 45906 Query 44263 ACATTGCGATTTTGCTTGCTTGTT 44286 || || |||||||| |||| Sbjct 45907 GCACACAGACTTTGCTTGTCTGTT 45930 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397431654081130