Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F000448265.2_202016-06- 02] 5,026 sequences; 39,481,229 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq4688 152 6e-32 seq4314 114 2e-20 seq4813 87.8 2e-12 seq3723 87.8 2e-12 seq3050 87.8 2e-12 seq2392 87.8 2e-12 seq1662 87.8 2e-12 seq3130 82.4 1e-10 seq3037 82.4 1e-10 seq2341 82.4 1e-10 >seq4688 Length=42416 Score = 152 bits (168), Expect = 6e-32 Identities = 454/692 (66%), Gaps = 9/692 (1%) Strand=Plus/Plus Query 111482 TCAAACTCCTCACCCACCGCG-TCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGA 111540 || |||||||| ||| | || ||| | ||||| || |||| || |||||||| | | Sbjct 40673 TCGAACTCCTCTCCC-CAGCACTCGTACAGACCGGGAGCCTCGTTGGGACAGAACAAACT 40731 Query 111541 CCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAA 111600 ||| | ||| |||| || ||||||||||| || || || | |||||| | | || Sbjct 40732 CCACTTGCCATTGGCCTCCACACGCTTCATGAATAGATCCGGCACCCACAGAGCATAGAA 40791 Query 111601 GAGATCTC-TACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCA 111659 | || | | ||| | || || ||| ||| ||||| || | || | |||||| | Sbjct 40792 CAAGTCACGTGCACGGTGCAGCT-CGTTACCATGGTTCTTGCGCAGATCCAAGAACTCAA 40850 Query 111660 TGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCG---ACGCCCAG 111716 | ||| |||||||| || || ||||| | || | |||||||| || || ||| Sbjct 40851 ACACATCAGCGTGCCACGGTTCCAGATAAATCGCAAATGATCCCTTGCGTTTACCTCCAC 40910 Query 111717 CTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTG 111776 | || | || || || || || ||||||| || || ||||| || || || || | | Sbjct 40911 CCTGGTCCACGTAACGTGCCGTATCGTTAAACACTCGCAGCATGGGGATGATGCCGTTGG 40970 Query 111777 ATTGACCATTTGTCCCCCGAATACGAGAT-TTATTGGCTCTCACATCATGGATGTGCATC 111835 | || || || || || || || | ||| | |||| | | || || || Sbjct 40971 ACGAGCCGTTCGTGCCGCGGATGT-AGCTGTTAGTAGCTCGGATGTTGTGCATACTGATG 41029 Query 111836 CCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCG 111895 ||||| || || |||||||| ||||| |||||||| | ||||| |||| || || Sbjct 41030 CCAATGCCTCCTGCCCACTTGGAGATGCACGCACACTGTTTCAGAGTGTCATAAATGCCT 41089 Query 111896 TTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTA 111955 | || ||||| |||| |||| | | |||||| |||| || || | ||| ||| Sbjct 41090 TCAATAGAGTCATCCTGCATGGCCAACAAGAAGCACGAAGACAATTGTGGACGTGGGGTA 41149 Query 111956 CCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGACATCTTGTCGTAT 112015 ||||||||||| || || || || ||||| |||| | ||| ||||| ||||| Sbjct 41150 CCAGCATTGAACAGCGTGGGGGTGGCGTGGGTGAAGAATTTTTGCGACATGAGTTCGTAA 41209 Query 112016 GTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATG 112075 ||||| | | | | |||| | ||||||||| | || || ||||||| ||| Sbjct 41210 GTCTCAAGTGCCGCCTTGATGTTCGTCTTGTGGATGCCTAGAGCCACGCGCATGATCATC 41269 Query 112076 TACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATAGCTCTTCTCAAGGGTT 112135 | ||| || ||||| | |||| | || || ||||| | | |||| || || Sbjct 41270 TGCTGGGGACGTTCCACCACTTTGCCGTGGACACGGAAGAGATATCCCCTCTCCAGTGTC 41329 Query 112136 TTGAGACCAAAGTAACCAAAATCATAGTCCCG 112167 || | ||||| ||| | | ||| |||| || Sbjct 41330 TTAAAGCCAAAATAATCGTATTCAAAGTCTCG 41361 >seq4314 Length=236279 Score = 114 bits (126), Expect = 2e-20 Identities = 329/500 (66%), Gaps = 12/500 (2%) Strand=Plus/Minus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 || || || || |||||||| |||||||| ||||| || | || || | ||||| Sbjct 46209 TACTCGCCCACACGCTTCTCGAAGAAGTTAGTCTTGCCCTGTAGAGAGATCATGTCCATC 46150 Query 122431 AAGTCAAATGGATTCTTCGCGTTCCAAATGGGTGGCACCCCAACTTGTTTGAGGAGACGA 122490 ||||||| || ||||| |||| | || | ||| |||| | || || || Sbjct 46149 CAGTCAAACGGGTTCTTGACGTTGTAGATCTTGGACACACCAAGCGAATACAGCAGGCGG 46090 Query 122491 TCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGTTACAT 122550 || | ||| |||||||||||| | |||| | | |||||||| ||||| || | | Sbjct 46089 TCTGCCACGAACTCAATGTACTGGCACATGAGCGCCGAGTTCATGCCGATCAGCTCCACT 46030 Query 122551 GGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGTGG 122610 ||||| | ||| | ||| | | || |||| || || || | || |||| Sbjct 46029 GGGAGCGAGTCGCTCACAAACTCGTGTTCGATCTTCACAGCGTCACGGATAATCTCGTGC 45970 Query 122611 ATA----GTTTCGGTAG-TGGGTCTATTACGCAAAGTCTTGAAGAGCTCCACGGCAAACT 122665 | | | | ||| || | |||| || || || | | | | ||||| | Sbjct 45969 ACACGCTGCTCCGGCAGCTTGGTC----AC-CAGCTTCGAGTACAACAGACAAGCAAAGT 45915 Query 122666 CCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGA 122725 | ||| | ||| ||||| || ||| || || || ||||||| ||||| ||||||| Sbjct 45914 CTGTGTGCATACCTTCATCACGACTAATGAGCTCGTTGGAGAAGCTCAGACCAGGCATGA 45855 Query 122726 GACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCA 122785 |||| |||||||| | ||| | || | ||| || || || ||||||||||| ||||||| Sbjct 45854 GACCACGCTTCTTGAGCCAGAAGATGGAGCAAAAGGAGCCCGAGAAGAAGATTCCCTCCA 45795 Query 122786 CACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTT-GCATCAAACCATTTC 122844 || ||||| || | ||| || || | | | ||| || ||||| | || ||||| | Sbjct 45794 CAGCTGCAAATGCCAGAAGACGCTCCGGGTATGAG-GACACTTTCGGGTCGCACCATCTT 45736 Query 122845 ATTGCCCATTTCGCCTTCTT 122864 | ||||| |||||||||| Sbjct 45735 AGCGCCCAACTCGCCTTCTT 45716 >seq4813 Length=865 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 145282 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 145341 |||||||| ||||| |||| | |||| ||||||||||||||| | | || |||||||||| Sbjct 568 GCTCTTATGGTGTAATGGTTAGCACTCTGGACTTTGAATCCAGCGATCCGGGTTCAAATC 509 Query 145342 CAGGTAGGAGCTT 145354 | ||||||||||| Sbjct 508 CCGGTAGGAGCTT 496 >seq3723 Length=666 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 145282 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 145341 |||||||| ||||| |||| | |||| ||||||||||||||| | | || |||||||||| Sbjct 112 GCTCTTATGGTGTAATGGTTAGCACTCTGGACTTTGAATCCAGCGATCCGGGTTCAAATC 171 Query 145342 CAGGTAGGAGCTT 145354 | ||||||||||| Sbjct 172 CCGGTAGGAGCTT 184 >seq3050 Length=640 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 145282 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 145341 |||||||| ||||| |||| | |||| ||||||||||||||| | | || |||||||||| Sbjct 112 GCTCTTATGGTGTAATGGTTAGCACTCTGGACTTTGAATCCAGCGATCCGGGTTCAAATC 171 Query 145342 CAGGTAGGAGCTT 145354 | ||||||||||| Sbjct 172 CCGGTAGGAGCTT 184 >seq2392 Length=7847 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 145282 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 145341 |||||||| ||||| |||| | |||| ||||||||||||||| | | || |||||||||| Sbjct 243 GCTCTTATGGTGTAATGGTTAGCACTCTGGACTTTGAATCCAGCGATCCGGGTTCAAATC 184 Query 145342 CAGGTAGGAGCTT 145354 | ||||||||||| Sbjct 183 CCGGTAGGAGCTT 171 >seq1662 Length=680 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 145282 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 145341 |||||||| ||||| |||| | |||| ||||||||||||||| | | || |||||||||| Sbjct 126 GCTCTTATGGTGTAATGGTTAGCACTCTGGACTTTGAATCCAGCGATCCGGGTTCAAATC 185 Query 145342 CAGGTAGGAGCTT 145354 | ||||||||||| Sbjct 186 CCGGTAGGAGCTT 198 >seq3130 Length=254 Score = 82.4 bits (90), Expect = 1e-10 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 145282 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 145341 |||||||| ||||| |||| | |||| ||||||||||||||| | | || |||||||||| Sbjct 12 GCTCTTATGGTGTAATGGTTAGCACTCTGGACTTTGAATCCAGCGATCCGGGTTCAAATC 71 Query 145342 CAGGTAGGAGCTT 145354 | || |||||||| Sbjct 72 CCGGGAGGAGCTT 84 >seq3037 Length=267 Score = 82.4 bits (90), Expect = 1e-10 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 145282 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 145341 |||||||| ||||| |||| | | || ||||||||||||||| | | || |||||||||| Sbjct 99 GCTCTTATGGTGTAATGGTTAGCGCTCTGGACTTTGAATCCAGCGATCCGGGTTCAAATC 40 Query 145342 CAGGTAGGAGCTT 145354 | ||||||||||| Sbjct 39 CCGGTAGGAGCTT 27 >seq2341 Length=236 Score = 82.4 bits (90), Expect = 1e-10 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 145282 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 145341 |||||||| ||| | |||| | |||| ||||||||||||||| | | || |||||||||| Sbjct 64 GCTCTTATGGTGGAATGGTTAGCACTCTGGACTTTGAATCCAGCGATCCGGGTTCAAATC 123 Query 145342 CAGGTAGGAGCTT 145354 | ||||||||||| Sbjct 124 CCGGTAGGAGCTT 136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627992543889600