Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F000448265.2_202016-06- 02] 5,026 sequences; 39,481,229 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq4688 152 6e-32 seq4314 141 1e-28 >seq4688 Length=42416 Score = 152 bits (168), Expect = 6e-32 Identities = 461/709 (65%), Gaps = 5/709 (1%) Strand=Plus/Plus Query 118790 AATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTA 118849 ||| ||||| | ||||| ||||| ||||| ||| || |||||||| | |||| | Sbjct 40507 AATCGTGCCGAGGTTCTGCTGATTAGACTTGCGGTTGGCGGCGTCCTTGTATAACATGAA 40566 Query 118850 TGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGACATCGGCAGCTGGCAC 118909 ||| |||||||| | || | | |||||||| ||| | | ||| | Sbjct 40567 AGGCACGCCCGTCTCAATCTGCGCGTCCAGAATAGCGAACCACAGCTGTTGAGCATTGAT 40626 Query 118910 AGTGGCGTTGGCTCGCCCCTCTTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACC 118969 || | ||| || || || ||||||||| | || | || ||||| || || Sbjct 40627 TGTCTTGCGGGCGCGGCCTTCACGCTCGTACTTCTCAAACAGCGTCTCGAACTCCTCTCC 40686 Query 118970 CACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTC 119029 | | ||| | || || || |||| | || ||||| | | ||| | ||| | Sbjct 40687 CCAGCACTCGTACAGACCGGGAGCCTCGTTGGGACAGAACAAACTCCACTTGCCATTGGC 40746 Query 119030 CTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGA-CAGC 119088 ||| || ||||||||||| || || || | ||| || || |||| | || || || Sbjct 40747 CTCCACACGCTTCATGAATAGATCCGGCACCCACAGAGCATAGAACAAGTCACGTGCACG 40806 Query 119089 GAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCC 119148 | || || | | || || || |||| ||||| || || | | ||| ||||||| Sbjct 40807 GTGCAGCT-CGTTACCATGGTTCTTGCGCAGATCCAAGAACTCAAACACATCAGCGTGCC 40865 Query 119149 ACGGTTCCAGGTACACCGCGATTGACCCCTTACG---ACGACCAGCCTGGTTTACATACC 119205 |||||||||| || | ||| | ||| ||||| || || ||| |||||| || || | Sbjct 40866 ACGGTTCCAGATAAATCGCAAATGATCCCTTGCGTTTACCTCCACCCTGGTCCACGTAAC 40925 Query 119206 TCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACCATCGGATTGGCCATTTGTCC 119265 || || ||||||| || || ||||| || ||||| || | ||| ||| || || | Sbjct 40926 GTGCCGTATCGTTAAACACTCGCAGCATGGGGATGATGCCGTTGGACGAGCCGTTCGTGC 40985 Query 119266 CCCGAATACGAGACTTATTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCC 119325 | || || ||| | |||| || | ||| || || ||||| || ||||||| Sbjct 40986 CGCGGATGTAGCTGTTAGTAGCTCGGATGTTGTGCATACTGATGCCAATGCCTCCTGCCC 41045 Query 119326 ACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCT 119385 |||| ||||| ||| |||| | ||| || | || || || || || |||||| ||| Sbjct 41046 ACTTGGAGATGCACGCACACTGTTTCAGAGTGTCATAAATGCCTTCAATAGAGTCATCCT 41105 Query 119386 TATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTGGGTGTACCAGCGTTGAAGAGAG 119445 | || | | |||||| |||| ||| || | || |||||||| ||||| || | Sbjct 41106 GCATGGCCAACAAGAAGCACGAAGACAATTGTGGACGTGGGGTACCAGCATTGAACAGCG 41165 Query 119446 TTGGTGTCGCGTGGATGAACATACCTTGGGACATCTTGTCGTAGGTCTC 119494 | || || |||||| |||| | ||| ||||| ||||| ||||| Sbjct 41166 TGGGGGTGGCGTGGGTGAAGAATTTTTGCGACATGAGTTCGTAAGTCTC 41214 >seq4314 Length=236279 Score = 141 bits (156), Expect = 1e-28 Identities = 347/521 (67%), Gaps = 14/521 (3%) Strand=Plus/Minus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 || || || || ||||||||||||||||| ||||| || | | ||| | ||||| Sbjct 46209 TACTCGCCCACACGCTTCTCGAAGAAGTTAGTCTTGCCCTGTAGAGAGATCATGTCCATC 46150 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAATTGCTGGCACTCCAATCTGTTTGAGGAGACGA 129847 | ||||| |||||||| ||| | || | ||| |||| | | || || || Sbjct 46149 CAGTCAAACGGGTTCTTGACGTTGTAGATCTTGGACACACCAAGCGAATACAGCAGGCGG 46090 Query 129848 TCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTACAT 129907 || | ||| |||||||||||| |||| | | |||||||| ||||| || | | Sbjct 46089 TCTGCCACGAACTCAATGTACTGGCACATGAGCGCCGAGTTCATGCCGATCAGCTCCACT 46030 Query 129908 GGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTGA 129967 ||||||| ||| | ||| | | || || | |||||| || || | || |||| Sbjct 46029 GGGAGCGAGTCGCTCACAAACTCGTGTTCGATCTTCACAGCGTCACGGATAATCTCGTGC 45970 Query 129968 ATGGTCTCCGTGC-CAGGTCTATTGCGCAAAGTCTTGAAGAGTTCCACGG-----CAAAC 130021 | | | ||| | || ||| || ||| |||| | || | |||| Sbjct 45969 A----CACGCTGCTCCGGCAGCTTGGTCACCAGCTTC--GAGTACAACAGACAAGCAAAG 45916 Query 130022 TCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATG 130081 || ||| | ||| || ||||| ||||| || || ||||||| |||||| |||||| Sbjct 45915 TCTGTGTGCATACCTTCATCACGACTAATGAGCTCGTTGGAGAAGCTCAGACCAGGCATG 45856 Query 130082 AGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCC 130141 ||||| |||||||| | |||||| || | ||||| ||||| ||||||||||| |||||| Sbjct 45855 AGACCACGCTTCTTGAGCCAGAAGATGGAGCAAAAGGAGCCCGAGAAGAAGATTCCCTCC 45796 Query 130142 ACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTT-GTATCAAACCACTT 130200 ||| || || || | |||||||| | | ||| | ||||| | || |||| | Sbjct 45795 ACAGCTGCAAATGCCAGAAGACGCTCCGGGTATGAG-GACACTTTCGGGTCGCACCATCT 45737 Query 130201 CATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCT 130241 | |||||| |||||| || | |||||||| ||||| Sbjct 45736 TAGCGCCCAACTCGCCTTCTTGGTCACACACGGGATGGTCT 45696 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618396346808560