Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F000448265.2_202016-06- 02] 5,026 sequences; 39,481,229 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq4688 192 7e-44 seq4314 129 7e-25 >seq4688 Length=42416 Score = 192 bits (212), Expect = 7e-44 Identities = 1171/1839 (64%), Gaps = 80/1839 (4%) Strand=Plus/Minus Query 104139 GAGACTACGACTTTGGTTATTTTGGTCTCAAAACCCTTGAGAAGAGCTATCTTCAACGGC 104198 |||||| || | | ||||||||| | || || || |||| | | ||||| || Sbjct 41360 GAGACTTTGAATACGATTATTTTGGCTTTAAGACACTGGAGAGGGGATATCTCTTCCGTG 41301 Query 104199 TCGATGGTGTCTTGATGGAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTC 104258 || | || || ||||| || ||| | ||| ||||||||||||| | || || | Sbjct 41300 TCCACGGCAAAGTGGTGGAACGTCCCCAGCAGATGATCATGCGCGTGGCTCTAGGCATCC 41241 Query 104259 ATGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCA 104318 | | |||| | | | | ||||| ||||| ||||| ||| | |||| Sbjct 41240 ACAAGACGAACATCAAGGCGGCACTTGAGACTTACGAACTCATGTCGCAAAAATTCTTCA 41181 Query 104319 TTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCT 104378 ||||| || || || || |||||||||||||| ||| | || ||| |||| |||| Sbjct 41180 CCCACGCCACCCCCACGCTGTTCAATGCTGGTACCCCACGTCCACAATTGTCTTCGTGCT 41121 Query 104379 TCCTTATCGCCAACAAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTG 104438 || | | |||| |||| ||||| || | || || |||| ||||| | |||||| Sbjct 41120 TCTTGTTGGCCATGCAGGATGACTCTATTGAAGGCATTTATGACACTCTGAAACAGTGTG 41061 Query 104439 CGCAAATCTCAAAGTGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATA 104498 || ||||| |||||||| || || ||||| || || || | | |||| | || Sbjct 41060 CGTGCATCTCCAAGTGGGCAGGAGGCATTGGCATCAGTATGCACAACATCCGAGCTACTA 41001 Query 104499 A-ATCTCGTATTCGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTA 104557 | | || || || || || || || || | || || || || ||||| || || Sbjct 41000 ACAGCT-ACATCCGCGGCACGAACGGCTCGTCCAACGGCATCATCCCCATGCTGCGAGTG 40942 Query 104558 TTTAACGCCACAGCGCGCTATGTAAATCAAGCTGGGCGT---CGAAAGGGATCTATCGCA 104614 ||||||| || || || || || | || | ||| || || |||||||| | || Sbjct 40941 TTTAACGATACGGCACGTTACGTGGACCAGGGTGGAGGTAAACGCAAGGGATCATTTGCG 40882 Query 104615 GTCTATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAA 104674 | ||||| || || |||||||| ||| | | |||||| | || |||| ||||| Sbjct 40881 ATTTATCTGGAACCGTGGCACGCTGATGTGTTTGAGTTCTTGGATCTGCGCAAGAACCAT 40822 Query 104675 GGTGACGAGGAGGCGCGGTGC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTT 104733 ||| |||| | || | |||| || || | |||| ||||| ||| | || ||||| || Sbjct 40821 GGTAACGA-GCTGCACCGTGCACGTGACTTGTTCTATGCTCTGTGGGTGCCGGATCTATT 40763 Query 104734 CATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGG 104793 ||||||| | || |||| | |||||| ||| | | || ||||| || |||| || || Sbjct 40762 CATGAAGCGTGTGGAGGCCAATGGCAAGTGGAGTTTGTTCTGTCCCAACGAGGCTCCCGG 40703 Query 104794 TCTCTCCGA-TGCCGTGGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAG 104852 ||| | ||| ||| | ||| |||||||| || | || | ||||||||| |||| Sbjct 40702 TCTGTACGAGTGCTG-GGGAGAGGAGTTCGAGACGCTGTTTGAGAAGTACGAGCGTGAAG 40644 Query 104853 GTCGGGCGACTGC--GACGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCA 104910 | | ||| | || ||| | ||| | ||||| |||||||| | | || Sbjct 40643 GCC--GCGCCCGCAAGACAATCAATGCTCAACAGCTGTGGTTCGCTATTCTGGACGCGCA 40586 Query 104911 AACCGAGACTGGTACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCA 104970 | ||||| || || | |||| | ||||| |||||| |||| ||| |||||| Sbjct 40585 GATTGAGACGGGCGTGCCTTTCATGTTATACAAGGACGCCGCCAACCGCAAGTCTAATCA 40526 Query 104971 AAAGAATTTGGGTGTGAT---CAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTAC 105027 |||| | || ||| | ||| ||| | || ||| | |||| | ||| Sbjct 40525 GCAGAACCTCGGCACGATTCGCTCGAG---CAACTTGTGCTGTGAAGTGATGGAGTATAC 40469 Query 105028 AGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGA 105087 |||||| ||| ||||| ||| | || || | || |||||||||| || | Sbjct 40468 GTCGCCTGATGAGGTGGCCGTGTGCAACTTGGCGTCCGTGGCGCTCCCCAAGTTCGTTG- 40410 Query 105088 TCCAGAGACAAAGACATTTGATTATGAAAAACTCCACGAAGTTACG-AAAACTG-TCACC 105145 ||| || | ||| | || | || || | || || || || || |||| Sbjct 40409 ---AGA-ACGCCG-TATTCAACTACAAGAAGCTGTATGATGT--CGTCAAGGTGATCACA 40357 Query 105146 AAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCG---TTGAGACTGCTCGTAAA 105202 ||||| |||| || || || || | ||||||| ||||| ||||| || Sbjct 40356 CGCAACCTGAACAAGGTCATCGACGTCAACTACTACCCCGTTATTGAG---GCTCGCAAT 40300 Query 105203 TCTAATATGAGACACCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCAT- 105261 || || ||| | |||||||| ||||| | ||||| ||||| || ||||| | ||||| Sbjct 40299 TCCAACATGCGTCACCGTCCTGTTGGTATTGGTGTGCAGGGCCTTGCGGACGCTTTCATC 40240 Query 105262 -TCTTTGTCGCCACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTG 105320 || | | | || || |||| || ||| || |||| | || || | Sbjct 40239 CTCATGGACTTTGCGTTCGAGAGTCCG--GAGGCGCGTGAGCTCAACAAGAATATCTTCG 40182 Query 105321 AGACCATGTATCACGCCGCTCTTGAGGCGAGTTCA---GAGTTGGCAGAGG--TTGATGG 105375 ||||||| || |||| || | ||| || ||| || |||| || ||| || Sbjct 40181 AGACCATCTACTACGCTTCTATGGAGACG---TCAATGGAACTGGCCACGGAATTG--GG 40127 Query 105376 TCCATATGAAACCTTTGAGGGTTCTCCAGCTTCA-CAAGGGGTGCTT-CAATTTGATATG 105433 || || || || || ||||||| || || || |||||| ||| || || |||||| Sbjct 40126 CCCGTACGAGACTTTCCAGGGTTCGCCTGC--CAGCAAGGGTATCTTCCAGTTCGATATG 40069 Query 105434 TGGGAAGGTGAGACCAAGCT----TCACTACGACTGGGAAGCTCTCAAGGA-ACG--CAT 105486 | |||| || | || || || | ||||||| || || ||||| | | | Sbjct 40068 T-GGAACGTCACGCCTTCCTCCGGTCTGTGGGACTGGGCTGCGCTTAAGGAGAAGGTGGT 40010 Query 105487 CAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGGCTCCAATGCCAACAGCCTCCACCGC 105546 || |||| || || || || ||||| | || || ||||| || || || || || Sbjct 40009 CA---AGAACGGCCTGCGCAATTCGCTCCTGGTCGCGCCGATGCCGACGGCGTCTACGGC 39953 Query 105547 ACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACACGACGAACATCTATCTGAGAAG 105606 ||| ||| | |||||||| || | | ||||| | ||| | ||||| || | | Sbjct 39952 ACAGATCCTCGGTAATAACGAGTCTATCGAACCGTTCACCTCTAACATGTACAACCGCCG 39893 Query 105607 AACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGCATCTCGTGGATGACCTCAAAGAGAT 105666 || |||||||||||| || || |||||| | || || |||| || | ||| | Sbjct 39892 CGTGCTTGCGGGAGAGTTTACCATCGTGAACAAGTACCTGATGAATGAGCTGATTGAGCT 39833 Query 105667 TGGTCTCTGGTCCAAGGATATGAAGGATCTCATGGTGAAAGCGGGTGGTTCCATTCAAAA 105726 ||| | ||| | || || | | || |||| | || ||||| | || || Sbjct 39832 GGGTGTGTGGGCTCCTGAGGTGCGTAACCAGATCTTGAATGACGGCGGTTCGGTGCAGAA 39773 Query 105727 TATTGTG-GAT--ATTCCAAATGAAATTAAGAAGTTGTACCGCACAGTTTGGGAAATCAA 105783 |||| | | ||||| | | || ||| || |||| || || ||||| ||||| Sbjct 39772 ---TGTGAGCTCCATTCCGGACCACATCAAGGAGAAGTACAAGACGGTGTGGGAGATCAA 39716 Query 105784 GATGAAG--GATGTCATTGACATGGCCGCAGATCGTGGTCGCTTCATTGATCAAAGTCAA 105841 | |||| ||| || | ||| || | || ||||||||| || ||| ||| ||||| Sbjct 39715 GCAGAAGTCGAT-TC-TGGACCTGTCTGCGGATCGTGGTGCCTACATCTGTCAGAGTCAG 39658 Query 105842 AGTATGAA---TCTCTTCATGGAAAGTCCAACGATGTCCAAGCTCTCTTCTATGCACATG 105898 |||| || | || ||| || || | |||||| | || |||||| | Sbjct 39657 TCGCTGAACATTCACATCGCCGAA---CCGACAAAAAGCAAGCTTACATCGATGCACTTT 39601 Query 105899 TACAGTTGGAAGAAGGGTCTCAAAACGGGGATGTATTAC 105937 ||| ||||||||||| ||||| ||||| ||||| ||| Sbjct 39600 TACGCGTGGAAGAAGGGGCTCAAGACGGGCATGTACTAC 39562 >seq4314 Length=236279 Score = 129 bits (142), Expect = 7e-25 Identities = 201/285 (71%), Gaps = 2/285 (1%) Strand=Plus/Plus Query 94672 CTCATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAA 94731 ||||| |||| ||| || ||||| | || |||||| | || || | || || | Sbjct 45638 CTCATTGACACGTACATCAAGGACGCTGTGGAGAAGGACCACCTGCTGCGTGCAATTGAG 45697 Query 94732 ACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATAC-AAAGTC 94790 || | |||||| | ||||| ||| |||||| | | |||| || | ||||| Sbjct 45698 ACCATCCCGTGTGTGACCAAGAAGGCGAGTTGGGCGCTAAGATGGTGCGACCCGAAAGTG 45757 Query 94791 GCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGG 94850 | | | | | ||||| || | |||||||| ||| ||||| ||||||||||| || Sbjct 45758 TCCT-CATACCCGGAGCGTCTTCTGGCATTTGCAGCTGTGGAGGGAATCTTCTTCTCGGG 45816 Query 94851 TTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTC 94910 ||||| ||| | || | |||||||||||||| ||||||||||| ||||| ||||||| Sbjct 45817 CTCCTTTTGCTCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCTGGTCTGAGCTTCTC 45876 Query 94911 CAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 ||||||||| || |||||| || || | ||| ||| ||||| Sbjct 45877 CAACGAGCTCATTAGTCGTGATGAAGGTATGCACACAGACTTTGC 45921 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583224156640240