Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F000448265.2_202016-06- 02] 5,026 sequences; 39,481,229 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq3944 91.5 4e-13 seq2755 91.5 4e-13 seq2351 91.5 4e-13 seq1740 91.5 4e-13 seq1665 91.5 4e-13 seq4688 89.7 2e-12 seq4641 89.7 2e-12 seq3756 87.8 5e-12 seq2504 87.8 5e-12 >seq3944 Length=32337 Score = 91.5 bits (100), Expect = 4e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949 |||||||||| |||| ||||||| ||||||||| ||||||||||||||| |||||| | | Sbjct 32122 GGGGATGTAGCTCAAATGGTAGAGCGCTCGCTTAGCATGCGAGAGGTACAGGGATCGATA 32063 Query 235950 CCCAGCATCTCCA 235962 ||| || |||||| Sbjct 32062 CCCTGCTTCTCCA 32050 >seq2755 Length=318 Score = 91.5 bits (100), Expect = 4e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949 |||||||||| |||| ||||||| ||||||||| ||||||||||||||| |||||| | | Sbjct 254 GGGGATGTAGCTCAAATGGTAGAGCGCTCGCTTAGCATGCGAGAGGTACAGGGATCGATA 195 Query 235950 CCCAGCATCTCCA 235962 ||| || |||||| Sbjct 194 CCCTGCTTCTCCA 182 >seq2351 Length=586 Score = 91.5 bits (100), Expect = 4e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949 |||||||||| |||| ||||||| ||||||||| ||||||||||||||| |||||| | | Sbjct 480 GGGGATGTAGCTCAAATGGTAGAGCGCTCGCTTAGCATGCGAGAGGTACAGGGATCGATA 421 Query 235950 CCCAGCATCTCCA 235962 ||| || |||||| Sbjct 420 CCCTGCTTCTCCA 408 >seq1740 Length=341 Score = 91.5 bits (100), Expect = 4e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949 |||||||||| |||| ||||||| ||||||||| ||||||||||||||| |||||| | | Sbjct 173 GGGGATGTAGCTCAAATGGTAGAGCGCTCGCTTAGCATGCGAGAGGTACAGGGATCGATA 114 Query 235950 CCCAGCATCTCCA 235962 ||| || |||||| Sbjct 113 CCCTGCTTCTCCA 101 >seq1665 Length=431 Score = 91.5 bits (100), Expect = 4e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949 |||||||||| |||| ||||||| ||||||||| ||||||||||||||| |||||| | | Sbjct 169 GGGGATGTAGCTCAAATGGTAGAGCGCTCGCTTAGCATGCGAGAGGTACAGGGATCGATA 228 Query 235950 CCCAGCATCTCCA 235962 ||| || |||||| Sbjct 229 CCCTGCTTCTCCA 241 >seq4688 Length=42416 Score = 89.7 bits (98), Expect = 2e-12 Identities = 195/292 (67%), Gaps = 0/292 (0%) Strand=Plus/Plus Query 206444 CACACTGGTCAATATATCGAGCTGTTTTATTAAATACGCCTAGCATAGGAATAATACCAT 206503 ||| |||||| | || || || || | ||||| || | ||||| || || || || | Sbjct 40908 CACCCTGGTCCACGTAACGTGCCGTATCGTTAAACACTCGCAGCATGGGGATGATGCCGT 40967 Query 206504 TAGAAGTTCCATTTGTTCCTCTAATATGACTGCCAGTCCCTCTAATATTATGTATATGTA 206563 | || | || || || || | || | ||| ||| ||| || || || ||| | Sbjct 40968 TGGACGAGCCGTTCGTGCCGCGGATGTAGCTGTTAGTAGCTCGGATGTTGTGCATACTGA 41027 Query 206564 ATCCAATTCCTCCTGCCCATTTTGAAATATTAGCACATTCTTTTAATGTATTATAAATTC 206623 ||||| ||||||||||| || || || ||||| | ||| | || | |||||| | Sbjct 41028 TGCCAATGCCTCCTGCCCACTTGGAGATGCACGCACACTGTTTCAGAGTGTCATAAATGC 41087 Query 206624 CATCAACACTATCACTTTCCATAGCAATTAAAAAACAAGAACTTAATTGTGGTCGTGGCG 206683 | |||| | ||| | ||| || | || || || ||| |||||||| ||||| | Sbjct 41088 CTTCAATAGAGTCATCCTGCATGGCCAACAAGAAGCACGAAGACAATTGTGGACGTGGGG 41147 Query 206684 TTCCAGCATTAAATAAAGTAGGAGTAGCATGTGTAAAATATTTTTGAGACAT 206735 | |||||||| || | || || || || || || || ||||||| ||||| Sbjct 41148 TACCAGCATTGAACAGCGTGGGGGTGGCGTGGGTGAAGAATTTTTGCGACAT 41199 >seq4641 Length=2218 Score = 89.7 bits (98), Expect = 2e-12 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 74488 GTGGGATTCGAACCCACGAGTCTTACGACAGTAGAACTTGAGTCTACCCCCTTAGACCAC 74547 |||||||| |||||||||||| | ||||||||||||||||||||||||||||||| | Sbjct 890 GTGGGATTTGAACCCACGAGTGCGAACACAGTAGAACTTGAGTCTACCCCCTTAGACCGC 949 Query 74548 TCGGGCA 74554 ||||||| Sbjct 950 TCGGGCA 956 >seq3756 Length=300 Score = 87.8 bits (96), Expect = 5e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949 |||||||||| |||| ||||||| ||||||||| ||||||||||||||| |||||| | Sbjct 135 GGGGATGTAGCTCAAATGGTAGAGCGCTCGCTTAGCATGCGAGAGGTACAGGGATCGATT 76 Query 235950 CCCAGCATCTCCA 235962 ||| || |||||| Sbjct 75 CCCTGCTTCTCCA 63 >seq2504 Length=303 Score = 87.8 bits (96), Expect = 5e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949 |||||||||| |||| ||||||| ||||||||| ||||||||||||||| |||||| | Sbjct 135 GGGGATGTAGCTCAAATGGTAGAGCGCTCGCTTAGCATGCGAGAGGTACAGGGATCGATC 76 Query 235950 CCCAGCATCTCCA 235962 ||| || |||||| Sbjct 75 CCCTGCTTCTCCA 63 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515156824245878