Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F000448265.2_202016-06- 02] 5,026 sequences; 39,481,229 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq4688 214 2e-50 seq4851 140 4e-28 seq3998 109 6e-19 seq2373 91.5 2e-13 >seq4688 Length=42416 Score = 214 bits (236), Expect = 2e-50 Identities = 531/788 (67%), Gaps = 26/788 (3%) Strand=Plus/Minus Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTA-CACGCGTGTCCGTGAGACGTAC 53251 |||||||||| || | || |||||| ||||| | || | | | |||||| ||| Sbjct 41264 TCATGCGCGTGGCTCTAGGCATCCACAA-GACGAACATCAAGGCGGCACTTGAGACTTAC 41206 Query 53252 GACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACG 53311 || | ||| ||||| | ||| || |||||||| || || |||||||| |||||||| Sbjct 41205 GAACTCATGTCGCAAAAATTCTTCACCCACGCCACCCCCACGCTGTTCAATGCTGGTACC 41146 Query 53312 AATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGC 53371 | || || |||| |||||| || |||| ||| |||||||||| || || ||| Sbjct 41145 CCACGTCCACAATTGTCTTCGTGCTTCTTGTTGGCCATGCAGGATGACTCTATTGAAGGC 41086 Query 53372 ATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATC 53431 || || || || || || ||||||| ||||||||||||| | || || || || ||| Sbjct 41085 ATTTATGACACTCTGAAACAGTGTGCGTGCATCTCCAAGTGGGCAGGAGGCATTGGCATC 41026 Query 53432 -CACTGCTCGAACGTCCG---TGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCG- 53486 ||| | ||| |||| | | ||| || || ||| || ||||||||| ||| Sbjct 41025 AGTATGCAC-AACATCCGAGCTACTAACAGC-TAC--ATCCGCGGCACGAACGGC-TCGT 40971 Query 53487 CCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGG 53546 || | || ||| | || ||||| || || || ||| | ||||| || ||||| |||||| Sbjct 40970 CCAACGGCATCATCCCCATGCTGCGAGTGTTTAACGATACGGCACGTTACGTGGACCAGG 40911 Query 53547 GTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTA 53606 |||| || || |||||||| || || || || || || || ||||||||||| || | Sbjct 40910 GTGGAGGTAAACGCAAGGGATCATTTGCGATTTATCTGGAACCGTGGCACGCTGATGTGT 40851 Query 53607 TGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGC--TGC-CGTGACC 53663 | ||||| | || ||||| ||| || ||| || ||| ||| | ||| |||||| Sbjct 40850 TTGAGTTCTTGGATCTGCGCAAGAACCATGGTAAC---GAGCTGCACCGTGCACGTGACT 40794 Query 53664 TGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGT 53723 |||| ||||||||| | ||||| || |||||| | |||||| | | ||| Sbjct 40793 TGTTCTATGCTCTGTGGGTGCCGGATCTATTCATGAAGCGTGTGGAGGCCAATGGCAAGT 40734 Query 53724 GGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCA-GGGTGTCTACGGTGAGGAGTTT 53782 || || | || || |||||| ||||| || | | ||| || || |||||||| Sbjct 40733 GGAGTTTGTTCTGTCCCAACGAGGCTCCCGGTCTGTACGAGTG-CTGGGGAGAGGAGTT- 40676 Query 53783 AACGAGA---TGTATCGGACGTACGCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCG 53839 ||||| ||| | || ||||| | | |||||| | |||| |||| || Sbjct 40675 --CGAGACGCTGTTTGAGAAGTACGAGCGTGAAGGCCGCGCCCGCAAGACAATCAATGCT 40618 Query 53840 CGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGC 53899 | || | ||| || || || | ||| | |||||||| ||| | ||||| Sbjct 40617 CAACAGCTGTGGTTCGCTATTCTGGACGCGCAGATTGAGACGGGCGTGCCTTTCATGTTA 40558 Query 53900 TACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGGCGTCATCAAATCGAGC 53959 |||||||| | | |||| ||| || ||| ||||| ||||| || |||||| Sbjct 40557 TACAAGGACGCCGCCAACCGCAAGTCTAATCAGCAGAACCTCGGCACGATTCGCTCGAGC 40498 Query 53960 AACTTATG 53967 ||||| || Sbjct 40497 AACTTGTG 40490 Score = 159 bits (176), Expect = 4e-34 Identities = 530/812 (65%), Gaps = 33/812 (4%) Strand=Plus/Minus Query 55133 ACTCGGAACCTGAACCGGGTCATCGACAAGAATTACTACCCGACTGAAGCGGCGCGCAAG 55192 || || ||||||||| |||||||||| || |||||||| | | ||| ||||| Sbjct 40359 ACACGCAACCTGAACAAGGTCATCGACGTCAACTACTACCCCGTTATTGAGGCTCGCAAT 40300 Query 55193 TCCAACCTCCGGCACCGGCCCATCGCCATCGGTGTACAGGGCTTGGCCGACATCTTCATG 55252 |||||| | || ||||| || | | || ||||| |||||| | || ||| ||||| Sbjct 40299 TCCAACATGCGTCACCGTCCTGTTGGTATTGGTGTGCAGGGCCTTGCGGACGCTTTCATC 40240 Query 55253 ATGCTCGGATTGCCCTTCGAC--TCGGAACCTGCTCGAGAAATTAACCAGGACATCTTC- 55309 | | | || | ||||| || | | || || || | ||| || | |||||| Sbjct 40239 CTCATGGACTTTGCGTTCGAGAGTCCGGAG--GCGCGTGAGCTCAACAAGAATATCTTCG 40182 Query 55310 AGTCGCATCTACTTTGCAGCGCTCGAGGAGTCGTGTCATCTGGCTATGAGCGAGGGGACC 55369 || | |||||||| || | | ||| ||| | ||||| | | ||| | Sbjct 40181 AGAC-CATCTACTACGCTTCTATGGAGACGTCAATGGAACTGGCCACGGAATTGGGCCCG 40123 Query 55370 TACGAGACGTTCCGTGATTCGCCAGCTGACAAGGGACTTCTCCAGTTCGATCTATGG--- 55426 |||||||| |||| | |||||| || |||||| | ||||||||||| | ||| Sbjct 40122 TACGAGACTTTCCAGGGTTCGCCTGCCAGCAAGGGTATCTTCCAGTTCGATATGTGGAAC 40063 Query 55427 GGCAAGTCTGACCCCA---TGTTTGACAAGT------TGAAGCATGACATTCACTTGTGG 55477 | || | || | || ||| ||| | | ||| | | | | | Sbjct 40062 GTCACGCCTTCCTCCGGTCTGTGGGACTGGGCTGCGCTTAAGGAGAAGGTGGTCAAGAAC 40003 Query 55478 GGCCTACGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATG 55537 ||||| ||||| || || || || ||||| ||||| || ||||| ||||| |||||| | Sbjct 40002 GGCCTGCGCAATTCGCTCCTGGTCGCGCCGATGCCGACGGCGTCTACGGCACAGATCCTC 39943 Query 55538 GGCAACAACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCA 55597 || || |||||| | |||| |||| ||| | ||||| ||| ||||| || || Sbjct 39942 GGTAATAACGAGTCTATCGAACCGTTCACCTCTAACATGTACAACCGCCGCGTGCTTGCG 39883 Query 55598 GGTGAGTTTGTCATGATCAACAAGCACCTCGTCAAGGACCTGCAGAAGATCAACAAGTGG 55657 || |||||| ||| | |||||| |||| | || || ||| || | |||| Sbjct 39882 GGAGAGTTTACCATCGTGAACAAGTACCTGATGAATGAGCTGATTGAGCTGGGTGTGTGG 39823 Query 55658 AACCCGCAGATCAAGA--CGGATATTGTGCGGAACGGGGGGTCCGTCCAGAATCTGGAG- 55714 || || | | | ||| ||| | |||| || || || |||||| || || Sbjct 39822 GCTCCTGAGGTGCGTAACCAGATCTTGAATG--ACGGCGGTTCGGTGCAGAATGTG-AGC 39766 Query 55715 ---ATTCCTCTGCGTCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGT 55771 ||||| | ||||||||| ||| ||||||||||||||| |||||| | Sbjct 39765 TCCATTCCGGACCACATCAAGGAGAAGTACAAGACGGTGTGGGAGATCAAGCAGAAG--T 39708 Query 55772 CTGATT---GACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAAC 55828 | |||| ||| || ||| ||||||||||| |||||| ||| ||||| |||||| Sbjct 39707 C-GATTCTGGACCTGTCTGCGGATCGTGGTGCCTACATCTGTCAGAGTCAGTCGCTGAAC 39649 Query 55829 ATCTTCATGGAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAG 55888 || ||| | | || || |||| | | |||||||||||||||| ||||||| Sbjct 39648 ATTCACATCGCCGAACCGACAAAAAGCAAGCTTACATCGATGCACTTTTACGCGTGGAAG 39589 Query 55889 AAGGGACTCAAGACGGGTATGTACTATCTGCG 55920 ||||| ||||||||||| |||||||| |||| Sbjct 39588 AAGGGGCTCAAGACGGGCATGTACTACATGCG 39557 >seq4851 Length=159302 Score = 140 bits (154), Expect = 4e-28 Identities = 248/362 (69%), Gaps = 0/362 (0%) Strand=Plus/Plus Query 151874 ATCCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAA 151933 |||| || ||||| || || |||||||| || | ||| || | |||||| || Sbjct 101227 ATCCCGTGCCGATACCATCACTGCCGTTGACAAGCACCATAGGGATAATAGGAATATACC 101286 Query 151934 ACTCCGGCTCCACCTGTTGACCGTCATCCATCACGTATTTCAAAACGGAATTGTCAGCCG 151993 ||||||| || | | |||||||| || | || |||| |||| ||||| | Sbjct 101287 ACTCCGGTTCAATCGACTGACCGTCTTCGTCTAGATAGTTCAGAACGTCGTTGTCTAGTG 101346 Query 151994 GATCGAATATCCGTCGAGTCATAGGACTCAAACGCGTGAAGATGTATCGGGAGCTGGCCG 152053 | ||| | || || || || | | || ||||| ||||| || || || |||| Sbjct 101347 GGTCGTAGATTCGGCGCGTGAGCTGCTCCAGGTTGGTGAAAATGTAACGAGAACTAGCCG 101406 Query 152054 CATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAGGT 152113 ||||||| ||||| ||||| || ||||| || ||| || || |||| | | Sbjct 101407 CATCCTTACCACCCATCAGCCTTGTACCAAATTGACCAATTGGGGATAGAAGGTGAACAT 101466 Query 152114 TGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCTTCAC 152173 ||||| || ||||||| ||| |||| |||||| || |||||||| || ||| |||| Sbjct 101467 TGTTGCTTCCAACGAAATCCTGCGCCATATTCACGATACAGCCCTGCAAACCCGCCTCAC 101526 Query 152174 CGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATGTCCG 152233 |||||||||| || | ||||| | || ||||| |||||||| || ||||| | |||| Sbjct 101527 CGTGGTGATATGCAGAGTGCTCAGAGACATATCCAGCCAACTGTGCTACCTTGAGCTCCG 101586 Query 152234 TC 152235 || Sbjct 101587 TC 101588 >seq3998 Length=77256 Score = 109 bits (120), Expect = 6e-19 Identities = 298/447 (67%), Gaps = 12/447 (3%) Strand=Plus/Minus Query 117152 CCAGTTCCGATACCCTCTGCACCATTCATCAGAATCATCGGCACGACAGGAACGTAGAAC 117211 || ||||||||||||||||||||||||| || | |||||| | || |||||| ||| | Sbjct 15942 CCCGTTCCGATACCCTCTGCACCATTCACGAGCAGCATCGGGATGATAGGAACATAGTGC 15883 Query 117212 TCAGGCTCCACCTGCAGACCGTCGTCCGTGACGTACTTGAGCACCGCATTGTCA--CTCG 117269 ||||||| || | | ||| ||||| | |||| | || ||| | || |||| Sbjct 15882 ACAGGCTCAACAGGGAAACCATCGTCGTCGGCGTAGCGCAACAACGCGTCATCCTCCTCG 15823 Query 117270 GATCGAATATGTTCTTGGTCCACGGTGCTAGGCGAGTGAAAA--TGTAACGAGAGCTTGC 117327 | ||| | || || | || | |||| ||| ||||||||| || || Sbjct 15822 GG--GAACAGCAGACGAGTGTAC--TTCTGGAGCAGTGTAAAGATGTAACGAGGACTAGC 15767 Query 117328 AGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGTCCACTCGGCTCCAAGAGGTTCAG 117387 ||||||||||| || | || || || || || || || | || | | || Sbjct 15766 GGCATCCTTGCCTCCTTGTAACCGGGTGCCAAACTGGCCTGATGGGTACAGTAAGGGGAG 15707 Query 117388 GTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGTACCTTGGAGGCTCGCCTC 117447 || || | || ||| ||| || |||| ||| ||||| || || | ||||| Sbjct 15706 ATTATTAGAACCGACATAGTCCTGCGCCATGTTAACAATTGTCGAGTGCAACGAAGCCTC 15647 Query 117448 ACCATGGTGATACGCCGTCTGCTC-CGCCACGTAGCCCGCCAGCTGAGCCACCTTCATGT 117506 || |||||||| ||||| ||||| | || ||||||||| ||||| |||||||| | | Sbjct 15646 GCCGTGGTGATAGGCCGTGTGCTCACTGCA-GTAGCCCGCAAGCTGGGCCACCTTGACCT 15588 Query 117507 CTGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACCTTGCGCTGACTTGGCTTCAGAC 117566 | ||| || || ||| ||||| ||||| | ||||||||||| ||| |||| Sbjct 15587 CACGCGTAAGTTTGCGCTTCAGGCATGCATAGAGAACCTTGCGCTGCGAAATCTTGAGAC 15528 Query 117567 CATCCGCCACGTGA-GGGATCGAACGC 117592 |||| |||| ||| || | ||| ||| Sbjct 15527 CATCAACCAC-TGACGGTAGCGACCGC 15502 Score = 95.1 bits (104), Expect = 1e-14 Identities = 196/289 (68%), Gaps = 2/289 (1%) Strand=Plus/Minus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 || |||||||| || | || || ||||||||||| ||| | ||| || |||||||| Sbjct 15789 GTAAAGATGTAACGAGGACTAGCGGCATCCTTGCCTCCTTGTAACCGGGTGCCAAACTGG 15730 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 || || || | || | | ||| || || | || || | | ||| |||| || ||| Sbjct 15729 CCTGATGGGTACAGTAAGGGGAGATTATTAGAACCGACATAGTCCTGCGCCATGTTAACA 15670 Query 152149 ATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCC 152208 || || |||| || || ||||||||||| ||||| ||||| | ||| ||| Sbjct 15669 ATTGTCGAGTGCAACGAAGCCTCGCCGTGGTGATAGGCCGTGTGCTCACTGCAGTAGCCC 15610 Query 152209 GCCAACTGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACC 152268 || | ||| |||||||| | || ||| || || ||| || || || || | ||| Sbjct 15609 GCAAGCTGGGCCACCTTGACCTCACGCGTAAGTTTGCGCTTCAGGCATGCATAGAGAACC 15550 Query 152269 TTGCGCTGGGATGGTTTCAAACCGTCCACCACGTGA-GGAATCGAACGC 152316 |||||||| || || | ||| || ||||| ||| || | ||| ||| Sbjct 15549 TTGCGCTGCGAAATCTTGAGACCATCAACCAC-TGACGGTAGCGACCGC 15502 >seq2373 Length=111235 Score = 91.5 bits (100), Expect = 2e-13 Identities = 70/83 (84%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 124950 CCCATGGCGTCCACATTGGCGGTATACTCGGGCTGATCAAAAGACAGTTTCACATGGGAC 125009 |||| |||||||||| ||| || ||||||| | | |||||||||| ||||||||||||| Sbjct 7012 CCCAAAGCGTCCACATCGGCCGTGTACTCGGCCAGTTCAAAAGACACTTTCACATGGGAC 6953 Query 125010 TGGGCACCTAGGTTGTACACCTC 125032 ||||| |||||||||||||| Sbjct 6952 ATTGCACCCAGGTTGTACACCTC 6930 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547181621154800