Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F000448265.2_202016-06- 02] 5,026 sequences; 39,481,229 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq4688 338 7e-88 seq3998 174 2e-38 seq3693 141 1e-28 seq4807 116 4e-21 seq2815 82.4 9e-11 >seq4688 Length=42416 Score = 338 bits (374), Expect = 7e-88 Identities = 1144/1753 (65%), Gaps = 64/1753 (4%) Strand=Plus/Plus Query 80036 GCGTCCGCAGAT--AGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCAT 80093 |||||||| || ||||||||||||||||||| ||||||||||| |||| | |||||| Sbjct 39550 GCGTCCGCGCATGTAGTACATGCCCGTCTTGAGCCCCTTCTTCCACGCGTAAAAGTGCAT 39609 Query 80094 AGAACTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGACA 80153 || | ||||| ||| || | | ||| |||||||| |||||| |||||| Sbjct 39610 CGATGTAAGCTTGCTTTTTGTCGGTTCGGCGATGTGAATGTTCAGCGACTGACTCTGACA 39669 Query 80154 GATGAAAGCCCCACGATCTGCCGCCATTTCAATAATTGACTTTTGTGGAATTTCCCATAC 80213 |||| | || |||||||| || | || || | ||| ||||| || || ||||| || Sbjct 39670 GATGTAGGCACCACGATCCGCAGACAGGTCCAGAATCGACTTCTGCTTGATCTCCCACAC 39729 Query 80214 -----TGTACGATACACCTTACGAAGCTCCTCTGGAATGTC---CAGATTTTGCACACTG 80265 ||||| | | |||| || | | || |||||| || ||| ||||| Sbjct 39730 CGTCTTGTAC--TTCTCCTT--GATG-TGGTCCGGAATGGAGCTCACATTCTGCACCGAA 39784 Query 80266 CCACCGTCCTTTACAATTTGATTTTTCAATTCAGACGTCCAGACACCAAGCTTGTGCAGA 80325 || ||||| || | || || || || |||| | ||| ||||| |||| ||| Sbjct 39785 CCGCCGTCATTCAAGATCTGGTTACGCACCTCAGGAGCCCACACACCCAGCTCAATCAGC 39844 Query 80326 TCTTTCACAAGGTGCTTGTTAATCATGACAAACTCTCCCGCGAGGGTGCGACGCAGATAC 80385 || |||| |||| |||||| | ||| |||||||||||| || ||| || ||| Sbjct 39845 TCATTCATCAGGTACTTGTTCACGATGGTAAACTCTCCCGCAAGCACGCGGCGGTTGTAC 39904 Query 80386 AGGTTTGTAGTGTAAGGCTCAAATGCCTCGTTGTTTCCGAGGATCTGAGCCGTGCTCGCC 80445 | ||| | ||| | || || | | |||||| || ||||||||||| ||||| |||| Sbjct 39905 ATGTTAGAGGTGAACGGTTCGATAGACTCGTTATTACCGAGGATCTGTGCCGTAGACGCC 39964 Query 80446 GTCGGCATCGGGCCGACCAACAGTGAATTCCGCAGGCCGTGCTTCTTGA------TATCC 80499 ||||||||||| |||||| || ||||| ||||||||| ||||||| | ||| Sbjct 39965 GTCGGCATCGGCGCGACCAGGAGCGAATTGCGCAGGCCG---TTCTTGACCACCTTCTCC 40021 Query 80500 T--CGCGCAAATCTGACCAAAAATCAACCCCAACGCTGTGAC--CCCACATGTCGTGCTG 80555 | ||||| | | || | | | || || ||||| |||||| ||| ||| Sbjct 40022 TTAAGCGCAGCCCAGTCCCACAGACCGGAGGAAGGC-GTGACGTTCCACATATCGAACTG 40080 Query 80556 CAAGATGCCCTCCGACGCCGGAGACCCCGCGAACGTCTCGTACGGGCCC---TCCGTCTT 80612 ||||| |||| || || || ||| ||| ||||||||||||||| |||| | Sbjct 40081 GAAGATACCCTTGCTGGCAGGCGAACCCTGGAAAGTCTCGTACGGGCCCAATTCCG---T 40137 Query 80613 GGCCAGCTC---ACACGACTCCATAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCTT 80669 |||||| || ||| ||||||| | |||| || ||| ||| |||| ||| Sbjct 40138 GGCCAGTTCCATTGACGTCTCCATA---GAAGCGTAGTAGATGGTCTCGAAGATATTCTT 40194 Query 80670 GTTCACACCGCGCGCCTGTGGGTCGTCGAACGACAAGCCCATCATCATGAACACGTCAGC 80729 ||| | | ||||||| || ||||||| ||| |||| | ||||| |||| || Sbjct 40195 GTTGAGCTCACGCGCCTCCGGACTCTCGAACGCAAAGTCCATGAGGATGAAAGCGTCCGC 40254 Query 80730 CAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCG-ATCGCTCGGCCTCCG 80788 |||||||| || || || | | || ||||| ||| |||| | || || ||||| Sbjct 40255 AAGGCCCTGCACACCAATACCAACAGGACGGTGACGCATGTTGGAATTGC-GAGCCTCAA 40313 Query 80789 GAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAACAACCCGTGTAA 80848 || ||||| |||| |||||||| ||||||||||||||| | ||| | Sbjct 40314 TAACGGGGTAGTAGTTGACGTCGATGACCTTGTTCAGGTTGCGTGTGATCACCTTGACGA 40373 Query 80849 CATCATGAAGTTTCTGAAAGTCGAATTGGTTCCCCTTCACAAATGCCGGAAGGCTCAGGG 80908 |||||| || |||| ||| |||| | || || || || || || || Sbjct 40374 CATCATACAGCTTCTTGTAGTTGAATACGGCGTTCTCAACGAACTTGGGGAGCGCCACGG 40433 Query 80909 ACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCGACGATTTCCGTGCACA 80968 |||||| ||||||||||||||||| |||| ||| |||| | | ||| ||||| Sbjct 40434 ACGCCAAGTTGCACACGGCCACCTCATCAGGCGACGTATACTCCATCACTTCACAGCACA 40493 Query 80969 AATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGTCCT 81028 | || || ||| || || ||||| | ||| || |||||| |||| ||||||| Sbjct 40494 AGTTGCTCGAGCGAATCGTGCCGAGGTTCTGCTGATTAGACTTGCGGTTGGCGGCGTCCT 40553 Query 81029 TGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCAAATCT 81088 |||| ||||| | || || ||||| | ||| | | || || ||| ||| | || Sbjct 40554 TGTATAACATGAAAGGCACGCCCGTCTCAATCTGCGCGTCCAGAATAGCGAACCACAGCT 40613 Query 81089 CGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATACTTGGCGTA-AGCTTCG 81147 | || |||| ||||||| |||||| | | ||||| | | ||| || Sbjct 40614 GTTGAGCATTGATTGTCTTGCGGGCGCGGCCTTCACGCTCGTACTTCTCAAACAGCGTC- 40672 Query 81148 TCGAACT--TGGCACCGTGA--AGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACATCAG 81203 ||||||| | | || | || ||| || | || |||||| || || | || Sbjct 40673 TCGAACTCCTCTCCCCAGCACTCGTACAGACCGG---GAGC-CTCGTTGGGACAGAACAA 40728 Query 81204 GTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGGCGGT 81263 ||| | | | | ||| ||| ||||||||| || || | ||| || || Sbjct 40729 ACTCCACTTGCCATTGGCCTCCACACGCTTCATGAATAGATCCGGCACCCACAGAGCATA 40788 Query 81264 GAACAGGTCGCG-GCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGAAAGT 81322 ||||| ||| || ||| || | ||| | ||| ||||| ||||| || | || | Sbjct 40789 GAACAAGTCACGTGCA-CGGTGCAGCTCGTTACCATGGTTCTTGCGCAGATCCAAGAACT 40847 Query 81323 CCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGACCCCTTGCG---ACGGC 81379 | | | || || ||||| || |||||||| | || | || |||||||| || | Sbjct 40848 CAAACACATCAGCGTGCCACGGTTCCAGATAAATCGCAAATGATCCCTTGCGTTTACCTC 40907 Query 81380 CACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGATACCAT 81439 ||||||||| |||||||| || || ||||||| || |||| ||| |||||||| || | Sbjct 40908 CACCCTGGTCCACGTAACGTGCCGTATCGTTAAACACTCGCAGCATGGGGATGATGCCGT 40967 Query 81440 CTGACTGACCGTTCGTACCCACGATACGCGACCCCT--TGGCGCGCACCTTGCTGATTGA 81497 ||| |||||||| || ||| | | | | || || | ||| || Sbjct 40968 TGGACGAGCCGTTCGTGCCGCGGAT--GTAGCTGTTAGTAGCTCGGATGTTGTGCATACT 41025 Query 81498 AAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCATAAAT 81557 | || ||||| |||| |||||| || || |||||| | |||| || |||||||| Sbjct 41026 GATGCCAATGCCTCCTGCCCACTTGGAGATGCACGCACACTGTTTCAGAGTGTCATAAAT 41085 Query 81558 TCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATCTGAGGGCTTTT 81617 || || || || | | |||| | | |||||| || |||| || || | | Sbjct 41086 GCCTTCAATAGAGTCATCCTGCATGGCCAACAAGAAGCACGAAGACAATTGTGGACGTGG 41145 Query 81618 TGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGACATCAGGTC 81677 | || ||||||||||| || ||||| ||||| |||| | | ||||| || || Sbjct 41146 GGTACCAGCATTGAACAGCGTGGGGGTGGCGTGGGTGAAGAATTTTTGCGACATGAGTTC 41205 Query 81678 ATAGGTTTC-CTTGACGCGTGGAATATCGTCACCGTGAATACCGATAGCTACACGCATAA 81736 || || || || ||| | || ||||| ||| || || | ||| || ||||| | Sbjct 41206 GTAAGTCTCAAGTGCCGCCTTGATGTTCGTC-TTGTGGATGCCTAGAGCCACGCGCATGA 41264 Query 81737 ACATGTACTGGGG 81749 ||| | |||||| Sbjct 41265 TCATCTGCTGGGG 41277 >seq3998 Length=77256 Score = 174 bits (192), Expect = 2e-38 Identities = 204/274 (74%), Gaps = 4/274 (1%) Strand=Plus/Plus Query 31978 GTGGCGGACGGCCTCAAGCCTTCACAGCGCAAGGTGATATACGCCTGCCTCAAGAAGAAC 32037 |||| || || |||||| ||| ||||||||||| | || || ||||| ||| || Sbjct 15518 GTGGTTGATGGTCTCAAGATTTCGCAGCGCAAGGTTCTCTATGCATGCCTGAAGCGCAAA 15577 Query 32038 CTGTCGAGTGACATGAAGGTGGCGCAGCTGTCGGGCTACGTGGCA--GAGCAAACGGCCT 32095 || || |||| | |||||||| ||||| |||||||| ||| ||||| ||||||| Sbjct 15578 CTTACGCGTGAGGTCAAGGTGGCCCAGCTTGCGGGCTAC--TGCAGTGAGCACACGGCCT 15635 Query 32096 ATCACCACGGCGAGGCGTCGCTCCAGGGCACCATTGTCAACCTTGCTCAGAACTTTGTCG 32155 |||||||||||||||| ||| | || || ||||| ||| | || ||| ||| ||||| Sbjct 15636 ATCACCACGGCGAGGCTTCGTTGCACTCGACAATTGTTAACATGGCGCAGGACTATGTCG 15695 Query 32156 GTGCAAATAACCTGAACTTACTCGAGCCATCTGGACAGTTTGGGACCCGGCTCGCCGGTG 32215 || | ||||| || |||||| | ||||| || |||||||| |||||| | || | Sbjct 15696 GTTCTAATAATCTCCCCTTACTGTACCCATCAGGCCAGTTTGGCACCCGGTTACAAGGAG 15755 Query 32216 GCAAGGATGCTGCGAGCTCCCGTTACATCTTCAC 32249 |||||||||| || || | ||||||||||| || Sbjct 15756 GCAAGGATGCCGCTAGTCCTCGTTACATCTTTAC 15789 >seq3693 Length=10515 Score = 141 bits (156), Expect = 1e-28 Identities = 147/193 (76%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462 || ||||| |||||||| ||||| || || |||||||| || || || || || ||| | Sbjct 8115 ATCATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACGCTCGACGTGGAGCCG 8174 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 || ||||||| ||| | ||| ||||| |||||||||||||||||||| || ||| Sbjct 8175 TCGGACAGCATTGACAATGTCAAGCAGAAAATCCAGGACAAGGAGGGAATTCCGCCTGAC 8234 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582 ||||||||||| || || || || ||||| |||||||| | || || || | ||||| Sbjct 8235 CAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCTCGGACTAC 8294 Query 27583 AATGTCCAAAAGG 27595 || |||| |||| Sbjct 8295 AACATCCAGAAGG 8307 >seq4807 Length=216255 Score = 116 bits (128), Expect = 4e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || || |||||||| || || || || || ||| | Sbjct 80 ATGCAGATCTTCGTGAAGACACTGACGGGCAAGACCATCACGCTCGACGTGGAGCCTTCG 139 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || || | ||| ||||| ||||| || |||||||| || || || || |||||| Sbjct 140 GACTCGATCGACAATGTGAAGCAGAAAATCCAAGACAAGGAAGGCATCCCGCCTGACCAG 199 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 |||||||| || || || || ||||| || ||||| | ||| || || ||| ||||| || Sbjct 200 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGC-GACTACAA 258 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || ||||| || || | || || || || || Sbjct 259 CATCCAGAAGGAGTCTACACTTCACCTGGTGCTTCGCCTGCGTGGCGG 306 >seq2815 Length=67856 Score = 82.4 bits (90), Expect = 9e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 27508 GGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGT 27567 ||||| || || |||||||||||||| || || ||||| ||||| || ||||| | || Sbjct 8891 GGAATCCCGCCTGACCAGCAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGC 8832 Query 27568 ACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGC 27627 || || | ||||| || |||| ||||| ||| || || || || ||||||| || Sbjct 8831 ACTCTGTCGGACTACAACATCCAGAAGGAGAGCACGCTCCACCTGGTGCTGCGTCTGCGT 8772 Query 27628 GGTGG 27632 ||||| Sbjct 8771 GGTGG 8767 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570274570249120