Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F000448265.2_202016-06- 02] 5,026 sequences; 39,481,229 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq4401 185 7e-42 >seq4401 Length=89758 Score = 185 bits (204), Expect = 7e-42 Identities = 449/667 (67%), Gaps = 25/667 (4%) Strand=Plus/Minus Query 29876 AGCGGTTCCACGTTATCCAGGTAGACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCC 29935 ||||| || |||| | |||||| ||||| || || || | |||||| ||| || || Sbjct 88715 AGCGGCTCTACGTGGTTCAGGTATACGTGTGCATCACCAATAATGTGGATAAATTCGCCA 88656 Query 29936 GGTTCTAGCCCGGTGACGTGAGCCATCATGTA-CGTGAGGAGAGAGTAGCTGGCGATGTT 29994 |||| | || | || || |||| || || ||| || || | || ||||||||||| Sbjct 88655 GGTTTCAAACCAGCCACTTGGGCCA-CAAGTCGCGTCAGTAGCGCATAACTGGCGATGTT 88597 Query 29995 AAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCC 30054 || || || ||||| |||||||| |||| | |||||| | ||||||||| | ||| || Sbjct 88596 GAACGGCACGCCGAGGCCCATGTCAGCCGAACGCTGGTACATCTGACACGATAACTCGCC 88537 Query 30055 GTCGCTCACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCA---A 30111 || ||||||||||||||| | ||| || || || || ||||| | || | Sbjct 88536 ATCCGCCACGTAAAACTGACAAAACATGTGACATGGTGGCAGCGCCAT----CTCATTGA 88481 Query 30112 G-TCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTC-TTCTGGGTTGTTCCT--GA 30167 | || || ||||| || ||| | || || | ||| || || |||| | | Sbjct 88480 GATCCGCTGGATTCCACGCAGACAACACAATCCGACGGTCGGTCGGGTTTGTGCGTAGTT 88421 Query 30168 TGAGGTCCACGGCGTTTTGC-AGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATG 30226 || || ||| | || || |||||||||||| || | ||||||||| ||| Sbjct 88420 TGTGGATCAC----CTCAGCAAGTTGATCCACCCCCTGTCCAGTGTAGTCTGCATGCATA 88365 Query 30227 TCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCC 30286 |||||||||| ||||| || || | ||||||||| || ||||| |||||||||||||| Sbjct 88364 TCCGTGTACTTGGCTCCAAAGTGACGCCACTGGAATCCATACACTGGTCCCAGGTCTCCT 88305 Query 30287 TCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAG 30346 ||||||| || | || | |||||||| | |||| || || ||| | |||||| Sbjct 88304 ACTTCCCTCGACTGCAGTCCACGACTGTCCAAATACTCTCGCGATCCATTGCCATCCCAG 88245 Query 30347 ATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGC 30406 || | | |||||| ||| | | | || ||| || | ||||||||| Sbjct 88244 ATATGAATGTCCTTCTGCTGCAGCGTATGCGCACTCGTATCCCCACTAATGAACCACAGT 88185 Query 30407 AGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAAC----TG 30462 | |||||| | || | |||| || || ||||| ||||| || | || ||| | Sbjct 88184 AATTCCTCCGCCACACCTCTCCAGAATACTCTCTTAGTCGTCAGCAACGGGAACACGTTA 88125 Query 30463 TCCCTTGAGGCCGTACCTGGCCTGAGAACCAAACACGGACAAGACTCCC-GTGCCCGTCC 30521 |||| | || | | | ||||| ||||| || ||||| | |||| || ||||||| Sbjct 88124 TCCC-TCAGACTAAAGCGCATCTGAGCCCCAAATACCGACAA-AGTCCCTGTCCCCGTCC 88067 Query 30522 TGTCTCC 30528 |||||| Sbjct 88066 GGTCTCC 88060 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406285511710392