Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F000448265.2_202016-06- 02] 5,026 sequences; 39,481,229 total letters Query= NC_028906.1 Length=75933 Score E Sequences producing significant alignments: (Bits) Value seq4820 113 2e-20 >seq4820 Length=127298 Score = 113 bits (124), Expect = 2e-20 Identities = 323/493 (66%), Gaps = 13/493 (3%) Strand=Plus/Minus Query 66626 ATCGACGCTGAGCACTCCCTGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGACCTCGAC 66685 ||||| ||||| ||| || | ||| || | |||||||||||| | ||||| ||| |||| Sbjct 38202 ATCGATGCTGAACACGCCATTGACGCTCACTACGCCAAGGCGTTGGGTGTCGACATCGAT 38143 Query 66686 AACCTCGTGGTGGTTCAGCCCGATACCGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTC 66745 | || || ||||||||| | |||||| | || |||| |||| || || Sbjct 38142 GAGCTGTACGTTTCCCAGCCCGATTCGGGCGAGGAAGCTTTGGAAATCGCCGATACTCTG 38083 Query 66746 GTCAAGTCTGGCGAGCTGTCCATC--GTCGTCGTTGACTCCGTGGCGGCCCTGGTGCCGC 66803 || ||| || | ||||| | | ||||| | || || || || || || |||| Sbjct 38082 ATCCGGTCCGGTG--CTGTCGACCTTGTCGTGCTGGATAGTGTAGCAGCTCTCGTACCGC 38025 Query 66804 GCGCCGAGCTCGAAGGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGT 66863 | || ||||| || || || || || ||| || | | ||||| |||||||||||| Sbjct 38024 GTGCTGAGCTGGAGGGTGAAATGGGTGACCAGCAGATTGCACTGCAAGCGCGCCTCATGA 37965 Query 66864 CACAGGCCATGCGCAAGCTCACTGGCACCATCTCCAGCACCAAC---ACGCTGACGCTCT 66920 || || ||||||||||||| || | | |||| ||||| || | | ||| Sbjct 37964 GTCAAGCTTTGCGCAAGCTCACAGGTTCGCTGTCCAAGTCCAACTGTACCATCA---TCT 37908 Query 66921 GGGTCAACCAGTTGCGCGAGAAGATCGGCAACGTGGGCTACGGCCCGAATGAGACCACCA 66980 | |||||| | ||| ||||| | |||| | || || | |||| || Sbjct 37907 TCCTGAACCAGATCCGCCAGAAGGTTGGCA---TTATCTTTGGATCTCCTGAGGTGACAT 37851 Query 66981 CGGGCGGAAAGGCTTTGAGGTTCTACGCCTCAGTCCGTATGGATGTCCGTCGCATCGCCA 67040 | || |||| ||||| | | |||||| || || || | ||| |||| |||| | Sbjct 37850 CTGGTGGAACAGCTTTACGCTACTACGCGTCCGTACGGCTAGATATCCGCCGCAAAACGG 37791 Query 67041 CCGAGAAGGAAGGCGATGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAACA 67100 || || || ||||| ||| ||| |||||| || || ||||| | ||||||| Sbjct 37790 CCATCAAAGAGGGCGACCAGGTTGTAGGCAACGAGACGGTAGTCAAGGTGGCTAAGAACA 37731 Query 67101 AGCTGGCCCCGCC 67113 |||||||| |||| Sbjct 37730 AGCTGGCCTCGCC 37718 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 242845923713484