Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F000448265.2_202016-06- 02] 5,026 sequences; 39,481,229 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq4401 170 2e-37 >seq4401 Length=89758 Score = 170 bits (188), Expect = 2e-37 Identities = 463/698 (66%), Gaps = 13/698 (2%) Strand=Plus/Plus Query 34151 GGGGACCGGACCGGGACGGGGACCCTCTCCGTGTTCGGCACACAGGCCCGATACAACCTT 34210 || |||||||| ||||| ||||| | || || || || | ||| || | | || Sbjct 88060 GGAGACCGGACGGGGACAGGGACTTTGTCGGTATTTGGGGCTCAGATGCGCTTTAGTCTG 88119 Query 34211 CGGGG---CGAATTTCCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAG 34267 ||| || || ||| |||||||||| || | || | ||||| || |||| ||| Sbjct 88120 AGGGATAACGTGTTCCCGTTGCTGACGACTAAGAGAGTATTCTGGAGAGGTGTGGCGGAG 88179 Query 34268 GAGCTGCTGTGGTTCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTG 34327 || | ||||||||| | || |||| |||| | | ||| | || | Sbjct 88180 GAATTACTGTGGTTCATTAGTGGGGATACGAGTGCGCATACGCTGCAGCAGAAGGACATT 88239 Query 34328 AAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGG 34387 | |||||||| | | || || ||||| | | |||||| || || | | || || Sbjct 88240 CATATCTGGGATGGCAATGGATCGCGAGAGTATTTGGACAGTCGTGGACTGCAGTCGAGG 88299 Query 34388 GAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTAT 34447 || | || ||| |||| || || || || ||||||||| | |||||||| || |||| Sbjct 88300 GAAGTAGGAGACCTGGGACCAGTGTATGGATTCCAGTGGCGTCACTTTGGAGCCAAGTAC 88359 Query 34448 CGGGGGAGCGAAGCGGACTATTCGGGACAGGGAGCGGACCAGCT-GCAGTACGTGATCGA 34506 || | | || ||||| | |||||||| | ||| || || || | | |||||| | Sbjct 88360 ACGGATATGCATGCAGACTACACTGGACAGGGGGTGGATCAACTTGCTG-AGGTGATCCA 88418 Query 34507 CACCTTGAAGCGGAACCCTGAT-GACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGG 34565 || | | || || || || ||| | |||| ||| ||| |||||||| || || Sbjct 88419 CAAACT-ACGCACAAACCCGACCGACCGTCGGATTGTGTTGTCTGCGTGGAATCCAGCGG 88477 Query 34566 ATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATG 34625 ||||| | ||||||||| || || || |||| | || || || ||||| ||| ||| Sbjct 88478 ATCTCAATGAGATGGCGCTGCCACCATGTCACATGTTTTGTCAGTTTTACGTGGCGGATG 88537 Query 34626 GGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCA 34685 | ||| | || || ||| | || || || |||| |||||||| | || |||||||||| Sbjct 88538 GCGAGTTATCGTGTCAGATGTACCAGCGTTCGGCTGACATGGGCCTCGGCGTGCCGTTCA 88597 Query 34686 ACATTGCTAGTTACGCTCTGCTCACG-TACATGATCGCTCATGTCGTGGGGTTGGTTCCT 34744 |||| || ||||| || || || ||| || || | || || || | || ||| ||| Sbjct 88598 ACATCGCCAGTTATGCGCTACTGACGCGACTTG-TGGCCCAAGTGGCTGGTTTGAAACCT 88656 Query 34745 GGGGAGCTGGTGCATACGTTGGGGGATGCGCATATCTACCTGAACCACATCGAGCGGCTC 34804 || || | | || | | || ||||| || | |||||||||||| | |||| ||| Sbjct 88657 GGCGAATTTATCCACATTATTGGTGATGCACACGTATACCTGAACCACGTAGAGCCGCTT 88716 Query 34805 CGGATCCAGCTGCAACGAGAGCCC--CGACCGTTCCCC 34840 | | ||||| |||| | ||| ||||| |||||| Sbjct 88717 CAAAAACAGCT--AACGCGCACCCCGCGACCATTCCCC 88752 Score = 170 bits (188), Expect = 2e-37 Identities = 463/698 (66%), Gaps = 13/698 (2%) Strand=Plus/Minus Query 6505 GGGGAACGGTCG--GGGCTCTCGTTGCAGCTGGATCCGGAGCCGCTCGATGTGGTTCAGG 6562 |||||| ||||| ||| | |||| ||||| | | ||| |||| | |||||||||| Sbjct 88752 GGGGAATGGTCGCGGGGTGCGCGTT--AGCTGTTTTTGAAGCGGCTCTACGTGGTTCAGG 88695 Query 6563 TAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCAACCCCACGACATGA 6622 || | || ||||| || | | || | | || ||||| ||| || | || || Sbjct 88694 TATACGTGTGCATCACCAATAATGTGGATAAATTCGCCAGGTTTCAAACCAGCCACTTGG 88635 Query 6623 GCGATCATGTA-CGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCCAT 6681 || | || || ||| || || || ||||| || |||||||||||||| || | ||||| Sbjct 88634 GCCA-CAAGTCGCGTCAGTAGCGCATAACTGGCGATGTTGAACGGCACGCCGAGGCCCAT 88576 Query 6682 GTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGGCA 6741 ||| |||| || || || | ||| || || | ||| |||| ||| ||||| || || || Sbjct 88575 GTCAGCCGAACGCTGGTACATCTGACACGATAACTCGCCATCCGCCACGTAAAACTGACA 88516 Query 6742 GAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGCGCACAT 6801 | |||| || || || ||||||||| | ||||||| || |||||||| ||| Sbjct 88515 AAACATGTGACATGGTGGCAGCGCCATCTCATTGAGATCCGCTGGATTCCACGCAGACAA 88456 Query 6802 CACGATCCTTCTGTC-ATCAGGGTTCCGCTTCAAGGTGTCGATCACGTACTGC-AGCTGG 6859 ||| |||| | ||| || || || || | | ||| |||||| | | || || || Sbjct 88455 CACAATCCGACGGTCGGTCGGGTTTGTGCGT-AGTTTGTGGATCACCT-CAGCAAGTTGA 88398 Query 6860 TCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGATACTCCGCCCCAAAGTGTCTC 6919 ||| | |||||||| | ||||| || | | || |||| || |||||||| | | Sbjct 88397 TCCACCCCCTGTCCAGTGTAGTCTGCATGCATATCCGTGTACTTGGCTCCAAAGTGACGC 88338 Query 6920 CACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGGGAACCCCCGCTTG 6979 |||||||| || || || || |||| ||| || | |||| || | | || || || Sbjct 88337 CACTGGAATCCATACACTGGTCCCAGGTCTCCTACTTCCCTCGACTGCAGTCCACGACTG 88278 Query 6980 TCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCCCCGGGACGAGAGCTCC 7039 |||| | | ||||| || || | | |||||||| | | || | ||| Sbjct 88277 TCCAAATACTCTCGCGATCCATTGCCATCCCAGATATGAATGTCCTTCTGCTGCAGCGTA 88218 Query 7040 TTGGTGTTCGTGGCCCCCCTCACGAACCACAGCAGCTCCTCGACCACGCCCTTCCAGTAC 7099 | | |||| |||| || | ||||||||| | ||||| |||| || ||||| | Sbjct 88217 TGCGCACTCGTATCCCCACTAATGAACCACAGTAATTCCTCCGCCACACCTCTCCAGAAT 88158 Query 7100 ACACGTTTCGTCGTCAGCAGCGGAAATTCG---CCCCGAAGGTTGTATCGGGCCTGTGTG 7156 || | || |||||||||| ||| || || ||| || | | || ||| | Sbjct 88157 ACTCTCTTAGTCGTCAGCAACGGGAACACGTTATCCCTCAGACTAAAGCGCATCTGAGCC 88098 Query 7157 CCGAACACGGAGAGGGTCCCCGTCCCGGTCCGGTCCCC 7194 || || || || | ||||| ||||| |||||||| || Sbjct 88097 CCAAATACCGACAAAGTCCCTGTCCCCGTCCGGTCTCC 88060 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448234237914720