Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F000448265.2_202016-06- 02] 5,026 sequences; 39,481,229 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq4401 87.8 1e-12 >seq4401 Length=89758 Score = 87.8 bits (96), Expect = 1e-12 Identities = 174/255 (68%), Gaps = 2/255 (1%) Strand=Plus/Minus Query 118468 AGTGGCTCAATGTGATTCATATAGACATGAGCATCCCCAATTGTATGTATGAATTCACCA 118527 || ||||| | ||| |||| || || || ||||| ||||| | || || ||||| ||| Sbjct 88715 AGCGGCTCTACGTGGTTCAGGTATACGTGTGCATCACCAATAATGTGGATAAATTCGCCA 88656 Query 118528 GGTGTAAGCCCTGTCAGGTGAGCAATCATGTAT-GTCAACAAACTGTAGCTGGCTACATT 118586 ||| | | || | || || || | || || |||| | || ||||| | || Sbjct 88655 GGTTTCAAACCAGCCACTTGGGCCA-CAAGTCGCGTCAGTAGCGCATAACTGGCGATGTT 88597 Query 118587 AAAAGGAACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCC 118646 || || || || || |||||||| || || | |||||||| || || || | ||| || Sbjct 88596 GAACGGCACGCCGAGGCCCATGTCAGCCGAACGCTGGTACATCTGACACGATAACTCGCC 88537 Query 118647 GTTTGCAACATAAAACTGACTTATGATGTGACATGGAGGCAGAACCATGGAACTCAGTTG 118706 | || || |||||||||| | ||||||||||| ||||| |||| | | || | Sbjct 88536 ATCCGCCACGTAAAACTGACAAAACATGTGACATGGTGGCAGCGCCATCTCATTGAGATC 88477 Query 118707 GGCAGGATTCCAGGC 118721 || |||||||| || Sbjct 88476 CGCTGGATTCCACGC 88462 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414451411482664