Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F000448265.2_202016-06- 02] 5,026 sequences; 39,481,229 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq4401 134 1e-26 >seq4401 Length=89758 Score = 134 bits (148), Expect = 1e-26 Identities = 432/666 (65%), Gaps = 23/666 (3%) Strand=Plus/Minus Query 29648 AGCGGTTCCACGTGGTCAAGGTAGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCC 29707 ||||| || ||||||| ||||| ||||| ||||| || | |||||| ||| || || Sbjct 88715 AGCGGCTCTACGTGGTTCAGGTATACGTGTGCATCACCAATAATGTGGATAAATTCGCCA 88656 Query 29708 GGTTCTAGCCCGGTGACGTGAGCCATCATGTA-CGTGAGGAGAGAGTAGCTGGCGATGTT 29766 |||| | || | || || |||| || || ||| || || | || ||||||||||| Sbjct 88655 GGTTTCAAACCAGCCACTTGGGCCA-CAAGTCGCGTCAGTAGCGCATAACTGGCGATGTT 88597 Query 29767 AAAGGGCACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCC 29826 || ||||| ||||| |||||||| | || | |||||| | ||| ||||| | ||| || Sbjct 88596 GAACGGCACGCCGAGGCCCATGTCAGCCGAACGCTGGTACATCTGACACGATAACTCGCC 88537 Query 29827 GTCGCTCACGTAAAACTGAC---ACATGGCATGGCACGGAGGAAGGGCCATGAGACCCAA 29883 || |||||||||||||| ||||| || || || || || ||||| | | Sbjct 88536 ATCCGCCACGTAAAACTGACAAAACATG---TGACATGGTGGCAGCGCCATCTCATTGAG 88480 Query 29884 GTCTTTGGGGTTCCAGGCACACACGATGATGCGCCTGTC-TTCTGGGTTGTTCCT--GAT 29940 || || ||||| ||| ||| | || || | ||| || || |||| | | | Sbjct 88479 ATCCGCTGGATTCCACGCAGACAACACAATCCGACGGTCGGTCGGGTTTGTGCGTAGTTT 88420 Query 29941 GAGGTCCACGGCGTTTTGC-AGCTGATCCACCCCCATCCCCGAGTAGTCTGNNNNNNNNN 29999 | || ||| | || || |||||||||||| || | |||||||| Sbjct 88419 GTGGATCAC----CTCAGCAAGTTGATCCACCCCCTGTCCAGTGTAGTCTGCATGCATAT 88364 Query 30000 NNNNNNNNNNNNNNNCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCT 30059 | || || | ||||||||| || ||||| |||||||||||||| Sbjct 88363 CCGTGTACTTGGCTCCAAAGTGACGCCACTGGAATCCATACACTGGTCCCAGGTCTCCTA 88304 Query 30060 CTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGA 30119 ||||||| || | || | |||||||| | |||| || || ||| | ||||||| Sbjct 88303 CTTCCCTCGACTGCAGTCCACGACTGTCCAAATACTCTCGCGATCCATTGCCATCCCAGA 88244 Query 30120 TCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCA 30179 | | | |||||| ||| | | | || ||| || | ||||||||| | Sbjct 88243 TATGAATGTCCTTCTGCTGCAGCGTATGCGCACTCGTATCCCCACTAATGAACCACAGTA 88184 Query 30180 GCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAAC----TGT 30235 |||||| | || | |||| || || ||||| ||||| || | || ||| | | Sbjct 88183 ATTCCTCCGCCACACCTCTCCAGAATACTCTCTTAGTCGTCAGCAACGGGAACACGTTAT 88124 Query 30236 CCCTTGAGGCCGTACCTCGCCTGAGACCCAAACATGGACAAGACTCCC-GTGCCTGTCCT 30294 ||| | || | | | | ||||| |||||| | ||||| | |||| || || |||| Sbjct 88123 CCC-TCAGACTAAAGCGCATCTGAGCCCCAAATACCGACAA-AGTCCCTGTCCCCGTCCG 88066 Query 30295 GTCTCC 30300 |||||| Sbjct 88065 GTCTCC 88060 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406138320727036