Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F000448265.2_202016-06- 02] 5,026 sequences; 39,481,229 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq4807 134 3e-26 seq3693 114 3e-20 seq2815 86.0 1e-11 >seq4807 Length=216255 Score = 134 bits (148), Expect = 3e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || || ||||| |||||||| || ||||||||||| ||| | || | || || Sbjct 291 AGCACCAGGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCC 232 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || ||||||||||| || | ||||||||| | || ||| |||||||| ||| Sbjct 231 TCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCT 172 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || ||||| || || ||| | || | ||| ||| ||| || || || || || || Sbjct 171 TGGATTTTCTGCTTCACATTGTCGATCGAGTCCGAAGGCTCCACGTCGAGCGTGATGGTC 112 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 |||||||| || ||||||||||||| |||||| Sbjct 111 TTGCCCGTCAGTGTCTTCACGAAGATCTGCAT 80 >seq3693 Length=10515 Score = 114 bits (126), Expect = 3e-20 Identities = 143/196 (73%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 151917 TTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATA 151976 || ||||||||||| || | | || | || || || || || ||||||||||| Sbjct 8305 TTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 8246 Query 151977 AGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCT 152036 || | ||||||||| | || ||||| ||||| || || ||||| || |||||| | || Sbjct 8245 AGACGCTGCTGGTCAGGCGGAATTCCCTCCTTGTCCTGGATTTTCTGCTTGACATTGTCA 8186 Query 152037 ACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAG 152096 | |||||| || ||| || || || || || || |||||||| || |||||||| ||| Sbjct 8185 ATGCTGTCCGACGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAG 8126 Query 152097 ACCTGCATTTTACCCT 152112 | |||||| | |||| Sbjct 8125 ATCTGCATGATTCCCT 8110 >seq2815 Length=67856 Score = 86.0 bits (94), Expect = 1e-11 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 152001 CCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCA 152060 || ||||| || || ||||| || |||||| | || | |||||| || ||| || || Sbjct 8961 CCCTCCTTGTCCTGGATTTTCTGCTTGACATTGTCAATGCTGTCCGACGGCTCCACGTCG 9020 Query 152061 AGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || || || |||||||||||||| ||||| ||||| | ||||||||| Sbjct 9021 AGCGTGATGGTTTTGCCCGTGAGGGTCTTGACGAAAATCTGCATTTT 9067 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153746498988446