Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F000448265.2_202016-06- 02] 5,026 sequences; 39,481,229 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq4807 176 9e-39 seq3693 154 3e-32 seq2815 105 1e-17 seq4378 104 5e-17 seq4851 96.9 7e-15 seq4752 84.2 5e-11 seq4490 84.2 5e-11 seq2280 84.2 5e-11 >seq4807 Length=216255 Score = 176 bits (194), Expect = 9e-39 Identities = 178/229 (78%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| |||||||||||||| ||||| || | || || || |||||||||||||| Sbjct 307 ACCGCCACGCAGGCGAAGCACCAGGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCGCT 248 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 |||||||| || ||||| || || || ||||| ||||||| ||| || |||||| ||| Sbjct 247 CAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGG 188 Query 282992 AATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050 || || |||||||||||||| || ||| || || | ||||| | |||||||| || | Sbjct 187 GATGCCTTCCTTGTCTTGGATTTTCTGC-TTCACATTGTCGATCGAGTCCGAAGGCTCCA 129 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 | ||||| ||||| ||||| ||||||| ||||| ||||| |||||||| Sbjct 128 CGTCGAGCGTGATGGTCTTGCCCGTCAGTGTCTTCACGAAGATCTGCAT 80 >seq3693 Length=10515 Score = 154 bits (170), Expect = 3e-32 Identities = 149/189 (79%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971 || |||||||||||||| | ||||||||||| ||||| || || || ||||| |||||| Sbjct 8305 TTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 8246 Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATC 283030 | ||| || |||||| |||||| ||||||||||| ||||| || ||| || || | || Sbjct 8245 AGACGCTGCTGGTCAGGCGGAATTCCCTCCTTGTCCTGGATTTTCTGC-TTGACATTGTC 8187 Query 283031 GATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090 || ||||||| | || || ||||| ||||| ||||| ||||||| ||||| || || Sbjct 8186 AATGCTGTCCGACGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAAA 8127 Query 283091 TATCTGCAT 283099 |||||||| Sbjct 8126 GATCTGCAT 8118 >seq2815 Length=67856 Score = 105 bits (116), Expect = 1e-17 Identities = 99/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||||||||| || || ||||| || | |||||| || || |||||||||||||| | Sbjct 8766 ACCACCACGCAGACGCAGCACCAGGTGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCCGA 8825 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || |||||||| ||||| || || || || || ||||||| ||| || |||||| ||| Sbjct 8826 CAGAGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGG 8885 Query 282992 AATACC 282997 || || Sbjct 8886 GATTCC 8891 >seq4378 Length=48165 Score = 104 bits (114), Expect = 5e-17 Identities = 126/172 (73%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 317025 CGTCGGGAACCCTTCCAACTGACCGTTCACAATCGCCCTCATCAGTGTCGACTTGCCAGC 317084 || |||||| || || | ||| ||||| ||| || | ||| || || ||||| || Sbjct 15194 CGACGGGAAGCCGTCAAGCTGGCCGTTGGAAATGGCGCGCATAAGCGTAGACTTACCGCA 15253 Query 317085 ACCATTGGGGCCGCAAAGACCATACCGATTTCCCTTCTTCAGATTAAAACGGGTGTTGTT 317144 ||| ||||| ||||| ||||| || || | || ||| || || ||||| |||||| Sbjct 15254 ACCGTTGGGACCGCACAGACCGTAACGGTGGCCACGCTTTAGGCGAAGACGGGCGTTGTT 15313 Query 317145 CAGAAGAATCTTACCACCATATGCCAGAGAGAACTCACAATCACACAGGTCC 317196 ||| |||||| ||||||| || || || ||||||||||| | || |||||| Sbjct 15314 CAGCAGAATCATACCACCGTAAGCGAGCGAGAACTCACAGTTGCAAAGGTCC 15365 Score = 84.2 bits (92), Expect = 5e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 316162 TCTTTGTCTTCACCGGAAGCATAACGCCATTGGATGTACTGATTGGGCGTCATGTCAAGA 316221 || ||||| ||||| || ||||||| || ||||| |||| ||| ||| || Sbjct 14340 TCCTTGTCCTCACCAGACTGGAAACGCCACTGAATGTAGGCGTTGGCAGTCTCGTCGAGG 14399 Query 316222 TGATCCTCGATGTGGTGGAAAGCGTGCTGTGCCACGTAAGCAAGACGCATATTTGGATGC 316281 || || || ||||| |||||||||||||| || |||||||| | |||||| || ||| Sbjct 14400 TGCTCTTCAATGTGATGGAAAGCGTGCTGAGCGACGTAAGCGAAACGCATGGAAGGGTGC 14459 Query 316282 TTCCAAACGCTACCGTTAGTAGTTTCCATCTGCCCTGTTAGCACTTTAATGAGAGTACTT 316341 ||||| || ||||| || | ||| | || || || |||| || || || || Sbjct 14460 TTCCATACCGTACCGACGGTGGGTTCAACCTCACCCGTCAGCATCTTGATCAGCGTCGAC 14519 Query 316342 TTTCCCGCGCCGTT 316355 || || || ||||| Sbjct 14520 TTACCGGCACCGTT 14533 >seq4851 Length=159302 Score = 96.9 bits (106), Expect = 7e-15 Identities = 146/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 273773 CAGTTTCGTGAAAATGTACCTGGCACTCGCATGGTCCTTGCCACCTTGCAGCCTCGAACC 273832 ||| || ||||||||||| | | ||| || ||||| ||||| |||||| | ||| Sbjct 101375 CAGGTTGGTGAAAATGTAACGAGAACTAGCCGCATCCTTACCACCCATCAGCCTTGTACC 101434 Query 273833 AAACTGACCC-TCGGGCAGTAGCCAGTTTATGTTGTTGCTACCGACGTAATCCTGAGCCA 273891 ||| ||||| | ||| | ||| || | |||||||| || ||| ||||||| |||| Sbjct 101435 AAATTGACCAATTGGGGA-TAGAAGGTGAACATTGTTGCTTCCAACGAAATCCTGCGCCA 101493 Query 273892 TATTCACGATAGTCCCCTGAAGGGATACCTCGCCGTGGTGATAGGCGCTGTGTTCGGCGA 273951 ||||||||||| ||||| | |||| ||||||||||| || ||| || | || Sbjct 101494 TATTCACGATACAGCCCTGCAAACCCGCCTCACCGTGGTGATATGCAGAGTGCTCAGAGA 101553 Query 273952 TATAACCACTGAACTGAGCAACCTT 273976 ||| ||| ||||| || ||||| Sbjct 101554 CATATCCAGCCAACTGTGCTACCTT 101578 >seq4752 Length=800 Score = 84.2 bits (92), Expect = 5e-11 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 |||||||||||||||||||||| ||||||||||| || |||| ||||||||||||| || Sbjct 676 TTAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGTGACCCGGGTTCAATTCCCGGA 734 >seq4490 Length=168330 Score = 84.2 bits (92), Expect = 5e-11 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 |||||||||||||||||||||| ||||||||||| || |||| ||||||||||||| || Sbjct 168179 TTAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGTGACCCGGGTTCAATTCCCGGA 168237 >seq2280 Length=278 Score = 84.2 bits (92), Expect = 5e-11 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 |||||||||||||||||||||| ||||||||||| || |||| ||||||||||||| || Sbjct 184 TTAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGTGACCCGGGTTCAATTCCCGGA 242 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046671794575004