Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F000448265.2_202016-06- 02] 5,026 sequences; 39,481,229 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq3693 145 7e-30 seq4807 141 9e-29 seq2815 116 3e-21 >seq3693 Length=10515 Score = 145 bits (160), Expect = 7e-30 Identities = 149/192 (78%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732 ||||||| ||||| ||||| ||||| ||||| |||| |||||||||||||||||||| | Sbjct 8307 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 8248 Query 41733 TCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACG 41792 |||| ||||| ||||| | |||| | |||||||||| |||||| ||||| || | Sbjct 8247 TCAGACGCTGCTGGTCAGGCGGAATTCCCTCCTTGTCCTGGATTTTCTGCTT-GACATTG 8189 Query 41793 ACACAG-TGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACG 41851 || | |||| || |||||| || | ||| || || || |||||||| ||||| || Sbjct 8188 TCAATGCTGTCCGACGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACA 8129 Query 41852 AAAATCTGCATG 41863 || ||||||||| Sbjct 8128 AAGATCTGCATG 8117 >seq4807 Length=216255 Score = 141 bits (156), Expect = 9e-29 Identities = 172/237 (73%), Gaps = 18/237 (8%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| || || || | |||||| || || || ||||||||| ||||| |||||| Sbjct 306 CCGCCACGCAGGCGAAGCACCAGGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTC 247 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| |||| || ||||||||||||||||| ||||| ||||| ||||| | || Sbjct 246 AGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGG 187 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGA------- 41808 | || |||||||| |||||| ||||| |||| ||||| |||| Sbjct 186 ATGCCTTCCTTGTCTTGGATTTTCTGCTT---------CACATTGTCGATCGAGTCCGAA 136 Query 41809 --CTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||||| || | ||| || || || |||||||| ||||| ||||| ||||||||| Sbjct 135 GGCTCCACGTCGAGCGTGATGGTCTTGCCCGTCAGTGTCTTCACGAAGATCTGCATG 79 >seq2815 Length=67856 Score = 116 bits (128), Expect = 3e-21 Identities = 101/124 (81%), Gaps = 1/124 (1%) Strand=Plus/Plus Query 41633 CCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCG 41692 || || || || ||||| | |||||| || ||||||||||||||||| ||||| ||||| Sbjct 8764 CCACCACCACGCAGACGCAGCACCAGGTGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCC 8823 Query 41693 GAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTC-CGC 41751 || || ||||| |||| || ||||||||||| ||||| ||||| ||||| ||||| || Sbjct 8824 GACAGAGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGC 8883 Query 41752 GGGA 41755 |||| Sbjct 8884 GGGA 8887 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462274955751200