Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F000785725.2_202015-10- 23] 2,070 sequences; 36,712,010 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq165 134 3e-26 seq846 113 1e-19 seq513 91.5 3e-13 >seq165 Length=52791 Score = 134 bits (148), Expect = 3e-26 Identities = 420/635 (66%), Gaps = 29/635 (5%) Strand=Plus/Plus Query 319401 CTTCACGAACTCGGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCGTAATG 319460 || |||||||| ||| || || |||||||| |||||||||| || | ||||| || Sbjct 14811 CTCCACGAACTTGGAAAGGTTGCCCTTGTAGATCTTCAGCTTACGGGTC---TCGTAGTG 14867 Query 319461 GATAATAGAGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATCACGCACGA 319520 || || || || || | ||| ||||| | ||||||||| ||||| || | || || Sbjct 14868 AATGATGTTAGTACAGACCGTGTCAAGGAAGCTGGAGTCGTGGGACACCATGATGCTCGT 14927 Query 319521 AACGTCCTTAAGGTTGATCAGGTA-TTCAATCAA-CCACCTCACGTTAGACACAGAAAGA 319578 |||| | ||||| ||||||| ||| || | |||| ||||| ||| | Sbjct 14928 CACGTTCGGCAGGTTCGTCAGGTAGTTC--TCGAGCCACGCAACGTTCTTGACATCCAAG 14985 Query 319579 TGGTTGGTCGGCTCGTCAAGAAGCAGTAGCTTTGCGTTCAGGAGCATTGCACGTGCAAGA 319638 ||||| |||||||| ||||||||||| | | || ||| | ||||| ||||| || || Sbjct 14986 TGGTTCGTCGGCTCATCAAGAAGCAGAATGTCGGCCTTCTGAAGCATAGCACGGGCCAGC 15045 Query 319639 GCGAGTTTCATTTTCCACCCTCCGGAAAGAGTGTTAATTG---GGGCAGATTGGCGCTCA 319695 | |||||||| ||||| || || ||||| ||| | | |||| ||| |||| Sbjct 15046 TCCAGTTTCATCTTCCAACCACCCGAAAGGGTGCCCACAGCCTGGGC---TTGCATCTCA 15102 Query 319696 -ATATCAAAGCCA-ACCGATTCTAGAGTAGTTACGATCTTTTCACGAGACCAAATGTTTT 319753 | || ||| ||| | || || |||| || | |||| | || | Sbjct 15103 GCGGTGAAGTCCACGCCGGT--AAGCGTGTCAACGACCTCCTGGCGAG---GAGTG---T 15154 Query 319754 CCTTTACTTGTTCATC--ATTGGCAATGAAGTCAATGATAGCCGTGTTAGAATCGGACCC 319811 |||| | | ||||| | || |||||||| | | | | | | || || | Sbjct 15155 CCTTCAGGTCCTCATCGAACAGG--ATGAAGTCCACAACGGACAGCTCGGCCTCCGAAGC 15212 Query 319812 GTCGAGATCGTGTTCCACGTAAGCAGTTTTCAAAACATC-CGCAGAGGGGAACCCTTCAA 319870 | | | ||| || ||| | |||| |||| | || ||| || ||||| || |||| Sbjct 15213 TTGCAAGTTGTGCTCGACGAACACAGTCTTCAGCTCGTCGCGC-GACGGGAAGCCGTCAA 15271 Query 319871 GCTGGCCGTTCACAATAGCGCGCATCAGGGTTGATTTACCCGCCCCGTTTGGCCCACACA 319930 |||||||||| ||| |||||||| || || || ||||| ||||| || || |||| Sbjct 15272 GCTGGCCGTTGGAAATGGCGCGCATAAGCGTAGACTTACCGCAACCGTTGGGACCGCACA 15331 Query 319931 GACCGTAGCGGTTTCCGCGTTTCAGGTTGAACCGCGTGTTGTTCAGAAGAATTTTTCCAC 319990 ||||||| |||| || || || ||| | || | ||||||||| ||||| | |||| Sbjct 15332 GACCGTAACGGTGGCCACGCTTTAGGCGAAGACGGGCGTTGTTCAGCAGAATCATACCAC 15391 Query 319991 CATATGCCAGAGAAAATTCACAATCACACAGATCC 320025 | || || || || || ||||| | || || ||| Sbjct 15392 CGTAAGCGAGCGAGAACTCACAGTTGCAAAGGTCC 15426 >seq846 Length=6143 Score = 113 bits (124), Expect = 1e-19 Identities = 68/72 (94%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||| Sbjct 4041 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCGAGC 4100 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 4101 CCCACGGTGGGC 4112 >seq513 Length=20403 Score = 91.5 bits (100), Expect = 3e-13 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 165711 CCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCC 165770 |||||||||||||||||||||||||| | ||||||| | ||||||||||||||||||| Sbjct 1313 CCCGTCTAGCTCAGTCGGTAGAGCGCTGGCCTTTTAAGCCAGTGGTCGTGGGTTCGAGCC 1254 Query 165771 CCACG 165775 ||||| Sbjct 1253 CCACG 1249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057795944524100