Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F000785725.2_202015-10-
23] 2,070 sequences; 36,712,010 total letters
Query= NC_001350.1
Length=112930
Score E
Sequences producing significant alignments: (Bits) Value
seq67 113 3e-20
>seq67
Length=90363
Score = 113 bits (124), Expect = 3e-20
Identities = 398/614 (65%), Gaps = 6/614 (1%)
Strand=Plus/Minus
Query 101642 GTTGGAAACGGTCTAGGAGTTCGCGTCAACTGCATTTTAAGAGCATCAATGTGATCTACA 101701
|| || || |||| || || ||||| | ||| ||| ||| | || | ||| | |
Sbjct 88687 GTGGGGAATGGTCGCGGGGTGCGCGTTAGCTGTTTTTGAAGCGGCTCTACGTGGTTCAGG 88628
Query 101702 TAGATGTGAGCATCTCCTATAGTATGGATAAACTCTCCAGGCACTAGATTAGTGACATGA 101761
|| | ||| ||||| || ||| | |||||||| || ||||| | | || || ||
Sbjct 88627 TATACGTGTGCATCACCAATAATGTGGATAAATTCGCCAGGTTTCAAACCAGCCACTTGG 88568
Query 101762 GCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAACCCCATA 101821
|| | | | || | || | ||| || || ||||| || ||||| || | |||||
Sbjct 88567 GCCACAAGTCGCGTCAGTAGCGCATAACTGGCGATGTTGAACGGCACGCCGAGGCCCATG 88508
Query 101822 TCAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCATCACAGACATAAAATTGACTT 101881
||||| || | || |||| ||||| || | || ||||| || ||||| ||||
Sbjct 88507 TCAGCCGAACGCTGGTACATCTGACACGATAACTCGCCATCCGCCACGTAAAACTGACAA 88448
Query 101882 AATACATGACAAGGCGGCAACACCATTTTAGGAATGTCTGAAACATTCCAAGCACACATT 101941
|| | ||||| || |||| | |||| | | | || | |||||| ||| |||
Sbjct 88447 AACATGTGACATGGTGGCAGCGCCATCTCATTGAGATCCGCTGGATTCCACGCAGACAAC 88388
Query 101942 AACATCCTTCTATCTGTAGGGTTTGTTTTTATAGTATCAATCAACTGTTTTAATTGGTCA 102001
| |||| | || || |||||||| || | | |||| || | ||| ||
Sbjct 88387 ACAATCCGACGGTCGGTCGGGTTTGTGCGTAGTTTGTGGATCACCTCAGCAAGTTGATCC 88328
Query 102002 ACTCCTTCTCCTTTATAATC-GCGCCCAACACCTTTATATTCTGCTCCGAAATGCCTCCA 102060
|| || | ||| | || || || || || | || | ||||| || || | |||
Sbjct 88327 ACCCCCTGTCCAGTGTAGTCTGCATGCATATCCGTG-TACTTGGCTCCAAAGTGACGCCA 88269
Query 102061 CTGAAATCCATACACAGGTCCAAGATCTCCTTCATCTCTGTCATAAAAACCAAGTTTATC 102120
||| ||||||||||| ||||| || |||||| | || || | | ||| | | ||
Sbjct 88268 CTGGAATCCATACACTGGTCCCAGGTCTCCTACTTCCCTCGACTGCAGTCCACGACTGTC 88209
Query 102121 TAAAAATGATCTAGATCCATTCGCATCCCAAATGTGCACG-CCAGCTGCTGATAGC-TCT 102178
||| | || |||||||| ||||||| || || | | || |||||| ||| | |
Sbjct 88208 CAAATACTCTCGCGATCCATTGCCATCCCAGATATGAATGTCCTTCTGCTGC-AGCGTAT 88150
Query 102179 TTGCTGTCAGTAGATCCTCTGATAAACCACAACAGTTCTTCAACAACACCTCTCCAAAAT 102238
|| || ||| || || || ||||||| | ||| || | ||||||||||| |||
Sbjct 88149 GCGCACTC-GTATCCCCACTAATGAACCACAGTAATTCCTCCGCCACACCTCTCCAGAAT 88091
Query 102239 ACTCTCTTAGTAGT 102252
||||||||||| ||
Sbjct 88090 ACTCTCTTAGTCGT 88077
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 361242086309570
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |