Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F000785725.2_202015-10- 23] 2,070 sequences; 36,712,010 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq7 277 2e-69 seq1125 127 2e-24 seq212 98.7 1e-15 >seq7 Length=236454 Score = 277 bits (306), Expect = 2e-69 Identities = 436/614 (71%), Gaps = 14/614 (2%) Strand=Plus/Minus Query 116591 GAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGACATGTGGCGCATGTAC 116650 || ||||| ||| |||||| | |||||||| || | | ||| |||||| |||||| Sbjct 188293 GAAAACCCGAACCGCTTCGTGCTATTCCCCATCCAGGAGCACGACGTGTGGCAGATGTAC 188234 Query 116651 AAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG-TCCAAGGACACGAG 116709 || ||||| ||||| |||||||| | || ||| ||||| || | || | | | || Sbjct 188233 AAGAAGGCGGAGGCCAGCTTCTGGACTGCGGAAGAGCTGGACTTGGTACACGACCTCAAG 188174 Query 116710 CGACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTT 116769 ||||||| | | | ||||||||||| || |||||||||||||| ||||||| || Sbjct 188173 -GACTGGGGAAACCTCACAGACAACGAGCGTCACTTCATCAAGCACGTCTTGGCCTTCTT 188115 Query 116770 CGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTC--GAGCGTTTCGCTCAGGAGGTG 116827 |||||||| || |||||||| |||||||| |||| || | ||| || | || || Sbjct 188114 TGCCGCCAGTGATGGCATCGTGAACGAGAACCTGGCTATGAAC-TTTAGCA-ATGAAGTA 188057 Query 116828 CAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCG 116887 |||||| | ||||| || |||||||||||||| || || ||||| |||||| | ||||| Sbjct 188056 CAGGTGCCTGAGGCTCGTTGCTTCTACGGCTTCCAAATTGCCATTGAGAACATCCACTCA 187997 Query 116888 GAAATGTATTCGACCCTCATCGACACGTACGT---GCGCTCTTCGGAGGAGAAGCTCCGT 116944 || |||| ||| ||||| ||||||||| | | | || |||| || | | || Sbjct 187996 GAGGTGTACTCGCTGCTCATTGACACGTACATCAAGGACGCTGTGGAGAAGGACCACC-- 187939 Query 116945 TTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGT-GGGCGCTGCG 117003 || || || || ||||| || ||||| || | ||||||| |||| ||||||| | Sbjct 187938 -TGCTGCGTGCAATTGAGACCATCCCGTGTGTGACCAAGAAGGC-GAGTTGGGCGCTAAG 187881 Query 117004 CTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGA 117063 ||| || | | || | || | | | ||||| || |||| || || || || || Sbjct 187880 ATGGTGCGACCCGAAAGTGTCCTCATACCCGGAGCGTCTTCTGGCATTTGCAGCTGTGGA 187821 Query 117064 GGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCAT 117123 ||| ||||||| |||||| || | |||| || ||||||||||| || || ||||| Sbjct 187820 GGGAATCTTCTTCTCGGGCTCCTTTTGCTCCATCTTCTGGCTCAAGAAGCGTGGTCTCAT 187761 Query 117124 GCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTT 117183 ||| || |||| ||| |||||||||||| | || || ||| |||| ||||| Sbjct 187760 GCCTGGTCTGAGCTTCTCCAACGAGCTCATTAGTCGTGATGAAGGTATGCACACAGACTT 187701 Query 117184 TGCCTGTTTGCTGT 117197 ||| ||| || ||| Sbjct 187700 TGCTTGTCTGTTGT 187687 >seq1125 Length=3167 Score = 127 bits (140), Expect = 2e-24 Identities = 142/190 (75%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || |||||||| |||||||| ||||||| || | | Sbjct 663 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACGCTCGACGTGGAGCCGTCG 722 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||||| | | | ||||| | ||||| | ||||| ||||| || || | |||||| Sbjct 723 GACAGCATTGACAATGTCAAGCAGAAAATCCAGGACAAGGAGGGAATTCCGCCTGACCAG 782 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| ||| ||||| ||||| || |||| ||||| ||| ||||||||| Sbjct 783 CAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCTCGGACTACAAC 842 Query 40870 ATCCAGAAGG 40879 |||||||||| Sbjct 843 ATCCAGAAGG 852 >seq212 Length=44092 Score = 98.7 bits (108), Expect = 1e-15 Identities = 99/129 (77%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 || ||||| | |||||||| || || |||| ||| ||||| |||||||| |||| ||| Sbjct 8240 GGAATCCCGCCTGACCAGCAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGC 8181 Query 40852 ACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGG 40911 || || ||||||||||||||||||||| |||||| || || ||| |||| || | Sbjct 8180 ACTCTGTCGGACTACAACATCCAGAAGGAGAGCACGCTCCACCTGGTGCTGCGTCTGCGT 8121 Query 40912 GGCGGCGGC 40920 || || ||| Sbjct 8120 GGTGGTGGC 8112 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515205868703200